Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16180 248 / 5e-75 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G18390 167 / 4e-45 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 162 / 2e-43 ATCFM3A CRM family member 3A (.1) AT4G14510 158 / 9e-42 ATCFM3B CRM family member 3B (.1) AT4G29750 152 / 7e-40 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 137 / 9e-35 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G13070 79 / 4e-16 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 79 / 9e-16 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 73 / 7e-14 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 64 / 1e-10 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033576 [exp] 451 / 2e-153 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10009031 [exp] 169 / 1e-45 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 167 / 9e-45 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10001187 [exp] 159 / 4e-42 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10022091 [exp] 159 / 4e-42 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 149 / 1e-38 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 145 / 2e-37 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10020391 [exp] 83 / 4e-17 AT3G25440 427 / 1e-147 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Lus10040896 [exp] 82 / 1e-16 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116700 [exp] 263 / 3e-80 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.012G056100 [exp] 167 / 3e-45 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.006G148901 [exp] 153 / 4e-43 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 160 / 1e-42 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 142 / 2e-36 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.014G176900 [exp] 81 / 3e-16 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.013G083000 [exp] 79 / 4e-16 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.007G129600 [exp] 74 / 4e-14 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 62 / 5e-10 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.006G163100 [exp] 48 / 1e-05 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10017618 pacid=23155436 polypeptide=Lus10017618 locus=Lus10017618.g ID=Lus10017618.BGIv1.0 annot-version=v1.0 ATGCTTCATCATCTTGCTTCTTCTTCTTCATCTGCCGCGAAATACCCAGTTAGGACTTTCTTTACTAACACTCATCCTGATGGCGCCGCCACTTCAAGGC TTCCTCTTACCGTCGTCAGGGCTCACCACGCCGATGAAGGGAGTAGCGGCTGGTCGAGTGACGTGGTGGAGGCGAACATGAGCGTTCTTAAAGACAGGAT ACAGCAAGTTCAGATCAAGGAGCGGCTGTCTCTGGCGCTGTCTCTGGCGTATCCCGCCGATCACCGGCCGCCTTTTTCGCCGATGTCGACGAGGGATCAT CAGCCTCTTTCCGCAGCCAGCTCTTCTTCATCCAGCAGCACCACCAACAACATTCGGGTGAGCAACAACTACGGATGGAACTACGGCGGCGATGCGAGTA CGGTCAAATTGCGGCGGCGGAGGAAAAACGACGGAGGAGATGTCGTATTGCAAATGTTGAAGGTGATTGGGTTGGTTTCGTCCACCGTAGGAATCACATG CCTTTCCGGTAGCTGTCTGCTTTGTCTGGTTTCGCTCTTGACTCCAGACAGAGAATCTGAGATTGGAAGATTCCATCTGCATGAAGAAAGCATACGGGAG AAAGCAGCCGAGTCAGTCCACACTGTTGAAGATCTATCAATCGGCAATAGCAATATGGGAACTTTACACGAGTTCCGGGATATTCAAAACAAATGCAGGA TTTTGGCAGAAGTGAAGAAAGATTCTGAACTTCGATTCGAAGCTGCAAAGGAAAACCTGGAGAGGGAGTTGAGAATCCAAGAACGTAAACTTTTCATACT CGAGATTAAAATAGAGAAGTCAACGAGAGAGTTGACGAAACTGAATGCTGAGTGGGCACCAACCGAGGATGATGCTGACCGTGAAATACTTACAGAGGAG GAGAGAGAATGCTTCCGGAAGATTGGCCTAAAGATGCACAGCTGCTTAGTTCTCGGAAGGCGTGGCATCTTCAACGGGGTGGTGGAAGGCTTGCATCAGC ACTGGAAACACATAGAAGTAGTGAAGGTGATTACCATACAGAGGACATTTACACAGGTGATTTACACTGCGAAATCACTGGAAAAAGAAAGTGGCGGGAT ACTTGTCTCAGTAGAGAAACTGAGGAAAGGTCATGCGGTACTACTTTACCGTGGCAAAAATCACCGGCGGCCGCCCAAGTTCCATTCTCAGAATCTTCTA ACTAAAAGAGAGGCACTGCAACGGTCTATTCTAATGCAGAGGATTGGGGTAAGTGAAAGAAGTCTCCTTTTTACTGAAACTTCACTTCAGATATCCTAA
AA sequence Show only first row Show all	>Lus10017618 pacid=23155436 polypeptide=Lus10017618 locus=Lus10017618.g ID=Lus10017618.BGIv1.0 annot-version=v1.0 MLHHLASSSSSAAKYPVRTFFTNTHPDGAATSRLPLTVVRAHHADEGSSGWSSDVVEANMSVLKDRIQQVQIKERLSLALSLAYPADHRPPFSPMSTRDH QPLSAASSSSSSSTTNNIRVSNNYGWNYGGDASTVKLRRRRKNDGGDVVLQMLKVIGLVSSTVGITCLSGSCLLCLVSLLTPDRESEIGRFHLHEESIRE KAAESVHTVEDLSIGNSNMGTLHEFRDIQNKCRILAEVKKDSELRFEAAKENLERELRIQERKLFILEIKIEKSTRELTKLNAEWAPTEDDADREILTEE ERECFRKIGLKMHSCLVLGRRGIFNGVVEGLHQHWKHIEVVKVITIQRTFTQVIYTAKSLEKESGGILVSVEKLRKGHAVLLYRGKNHRRPPKFHSQNLL TKREALQRSILMQRIGVSERSLLFTETSLQIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	0	1
AT2G48020			Major facilitator superfamily ...		Lus10027975 [exp]	3.9	0.9355
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	5.7	0.9271
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	6.7	0.9413
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10009176 [exp]	7.9	0.9164
					Lus10026081 [exp]	7.9	0.9397
AT1G76070			unknown protein		Lus10005623 [exp]	8.5	0.9267
AT3G25570			Adenosylmethionine decarboxyla...		Lus10035083 [exp]	10.7	0.9022
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	11.2	0.9232
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	11.5	0.9354
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	14.4	0.9356

Compare expression of checked genes

Lus10017618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.