Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66680 460 / 3e-163 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34360 52 / 2e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G60910 50 / 5e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G31740 44 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033577 [exp] 496 / 3e-176 AT1G66680 385 / 3e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019750 [exp] 52 / 2e-07 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016376 [exp] 49 / 3e-06 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062400 [exp] 494 / 4e-177 AT1G66680 414 / 4e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G068550 [exp] 77 / 9e-18 AT1G66680 56 / 1e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G261000 [exp] 59 / 1e-09 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G055600 [exp] 57 / 4e-09 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G150200 [exp] 50 / 9e-07 AT4G34360 385 / 1e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G317700 [exp] 46 / 2e-05 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G153200 [exp] 41 / 0.0007 AT3G17365 313 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G068600 [exp] 0 / 1 AT1G66680 0 / 1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10017619 pacid=23155519 polypeptide=Lus10017619 locus=Lus10017619.g ID=Lus10017619.BGIv1.0 annot-version=v1.0 ATGGCCGGAATACGGTTGCCCCCGGAAGAATCTGATATCTCTCAGCAGCAAATCCGAGCTGCAACGGCCGTCGCCGGTGATCTGATCTCTGACGACGAGC GGTCCGTCGCCGCGGACTCTTGGTCTATCAAGAGCGATTACGGAAGCACCCTCGATGACGAGCAGCGCCATGCTGATGCAACCGATGCTCTGTGTGCTGC CAACTTCCGTACTGCTTCGGATTACAGCTCTGATAAGGAAGAGCCAGATGCTGAAGTGGTGACATCTATGCTTGGCCTCCAGAGTTACTGGGATTCTGCA TATGCTGACGAGTTGTCTAATTTTCACGAGCATGGCCATGCCGGTGAAGTATGGTTTGGGGGTGATGTAATGGATGTCGTTACTTCTTGGACCAAAAACT TATGCATTGACATCTCGCAAGGTCATATTCCAAACCATGTTAATGGTACTAAATCTTCAGCTGCTGAAAATGGTGTTAAGTATTTGTCCAGCTGGAATGT GCTCGATGTTGGGACTGGCAATGGTTTGCTCCTTCAGGAACTTGCTAAACAGGGGTTTTCTGATCTAACTGGGGTGGATTACAGCGAGGGGGCAATTGAG CTTGCACGTAATGTGGCTAATCGTGATGGGTTTTCCAATATCAATTTCATGGTCGATGATGTTCTTGAAACAAAGATAGAGAACCAGTTTCGCCTTGTCG TCGATAAAGGGACATTAGATGCAATTGGATTGCATCCGGATGGCCCCATCAAGAGGGTCATGTATTGGGACTCGGTATCCAAGTTGGTTGCCTCTAGTGG CCTGTTGGTAATTACCTCGTGTAACAGTACAAAGGATGAGTTAGTACAAGAAGTGGAGAATTTCAATCAGAGGAGAGGTGAAGCCTCTGCAGAGAAAGAG CCGGAAGCATCGACAGCAGCAGCAGCTACTCCGTTCAAATACGTGGATCACGTTCGAACGTATCCTACGTTCATGTTTGGCGGATCAGTGGGATCGAGGG TTGCCACTGTCGCATTCCGTCGAAACTGA
AA sequence Show only first row Show all	>Lus10017619 pacid=23155519 polypeptide=Lus10017619 locus=Lus10017619.g ID=Lus10017619.BGIv1.0 annot-version=v1.0 MAGIRLPPEESDISQQQIRAATAVAGDLISDDERSVAADSWSIKSDYGSTLDDEQRHADATDALCAANFRTASDYSSDKEEPDAEVVTSMLGLQSYWDSA YADELSNFHEHGHAGEVWFGGDVMDVVTSWTKNLCIDISQGHIPNHVNGTKSSAAENGVKYLSSWNVLDVGTGNGLLLQELAKQGFSDLTGVDYSEGAIE LARNVANRDGFSNINFMVDDVLETKIENQFRLVVDKGTLDAIGLHPDGPIKRVMYWDSVSKLVASSGLLVITSCNSTKDELVQEVENFNQRRGEASAEKE PEASTAAAATPFKYVDHVRTYPTFMFGGSVGSRVATVAFRRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10017619 [exp]	0	1
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027453 [exp]	4.1	0.7054
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10026984 [exp]	11.2	0.6231
AT4G35240			Protein of unknown function (D...		Lus10014445 [exp]	11.4	0.6913
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	16.0	0.6621
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	26.9	0.6032
AT3G10320			Glycosyltransferase family 61 ...		Lus10042043 [exp]	33.1	0.6400
AT3G45740			hydrolase family protein / HAD...		Lus10001969 [exp]	42.5	0.6044
AT3G56250			unknown protein		Lus10030552 [exp]	45.1	0.6217
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	49.7	0.6207
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10034308 [exp]	55.4	0.5613

Compare expression of checked genes

Lus10017619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.