Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17350 76 / 1e-17 unknown protein AT3G03280 67 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033578 [exp] 155 / 3e-46 AT1G60640 75 / 7e-15 unknown protein Lus10035268 [exp] 93 / 2e-24 AT5G17350 116 / 4e-33 unknown protein Lus10034636 [exp] 89 / 7e-23 AT5G17350 92 / 5e-24 unknown protein Lus10013490 [exp] 85 / 4e-21 AT3G03280 110 / 6e-31 unknown protein Lus10007960 [exp] 74 / 1e-16 AT3G03280 109 / 3e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094000 [exp] 106 / 2e-29 AT3G03280 143 / 1e-43 unknown protein Potri.017G121200 [exp] 104 / 8e-29 AT3G03280 145 / 7e-45 unknown protein Potri.008G127200 [exp] 86 / 1e-21 AT3G03280 127 / 2e-37 unknown protein Potri.010G116000 [exp] 86 / 2e-21 AT3G03280 131 / 4e-39 unknown protein Potri.015G036800 [exp] 53 / 4e-09 AT1G18290 122 / 1e-35 unknown protein Potri.002G196900 [exp] 40 / 0.0002 AT4G02090 92 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017620 pacid=23155506 polypeptide=Lus10017620 locus=Lus10017620.g ID=Lus10017620.BGIv1.0 annot-version=v1.0 ATGATGGAGGCGCCGAACTATCTGGTCGTCGACGCCGCCACTCTCAAGATCGGAGCCAGGCTGTCTCCTCTGCCGGCGGATCACGACCTCGAGATCTCCA ATGTCTACGTCATGCTCCCGATGTACCGGAAGCACTCCTTAATCACCGCCTCCGACATCGCGTCGCTGTTCCTCACCGCCGATTCGCTCGTCAAGCGCCA CCGCCACAGCCGCCGCGGGAAAGTCCGGGACCTGCCGGAAATTACTGCCGCCGCCACCGCTGCTGCGAGTAGTACTCCGAGATTATTGAGTTTCGGAGGG TCGGATGAGGAAACGATGTCGTCTGATGCGGAGGCGGCGGGCCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGATCCATCGGCTGTCGATGT CGAGGTCGAGGAAGCCGTTGCTGGATACGATCGTTGAGGAGCCGGCGAGACATTCGATCCGGTGA
AA sequence Show only first row Show all	>Lus10017620 pacid=23155506 polypeptide=Lus10017620 locus=Lus10017620.g ID=Lus10017620.BGIv1.0 annot-version=v1.0 MMEAPNYLVVDAATLKIGARLSPLPADHDLEISNVYVMLPMYRKHSLITASDIASLFLTADSLVKRHRHSRRGKVRDLPEITAAATAAASSTPRLLSFGG SDEETMSSDAEAAGRGXXXXXXXXXMAIHRLSMSRSRKPLLDTIVEEPARHSIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17350			unknown protein		Lus10017620 [exp]	0	1
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	4.0	0.8070
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	5.1	0.8168
AT5G51040			unknown protein		Lus10043024 [exp]	7.7	0.8065
AT4G23470			PLAC8 family protein (.1.2.3)		Lus10018826 [exp]	7.7	0.7819
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10036429 [exp]	11.3	0.7578
AT2G27710			60S acidic ribosomal protein f...		Lus10019846 [exp]	13.9	0.7634
AT2G21100			Disease resistance-responsive ...		Lus10034482 [exp]	14.0	0.7706
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	15.4	0.7604
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	16.9	0.7626
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10013371 [exp]	21.9	0.7503

Compare expression of checked genes

Lus10017620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.