Plant FIBer expression Database

Lus10017621 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G60640 70 / 5e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033578
[exp]
232 / 5e-75 AT1G60640 75 / 7e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G094500
[exp]
127 / 5e-36 AT1G60640 76 / 8e-16 unknown protein
Potri.017G121000
[exp]
121 / 1e-33 AT1G60640 69 / 2e-13 unknown protein
PFAM info
Representative CDS sequence
>Lus10017621 pacid=23155467 polypeptide=Lus10017621 locus=Lus10017621.g ID=Lus10017621.BGIv1.0 annot-version=v1.0
ATGATCAAGAGGCAGTTCTACAGATTGGAGCATGGTGATAAAGATGAACCATCTTCGGATTCATCGTATTCCTCTGACTCTGATGTTGAAGCAGAAGCAT
CTGAGAATTCAGATCAAGATGATGCAGTTGCTGACGATGCTGATTCCCAAGATGGCAATTGCTCCACTTCGTCTGGATATGTAAGTGAGGATAGCTCAGC
CAATGAGATAAATGACGATCCATCAGATTACGAATCTGAAGATGACAAAGAATCTGATAGAAGCTTCAGCAAACCAAACGATAGAAAGGGTGTCAGTACT
ATTGTGAAGGGAACTGCTCCAGTTGATATCCCACATTGTGTAATGAAGTTCAAGTCAGTTTATAGGTGCCGGATTTGCCCTCGAATCATTTGCTTGACCG
ATCAGACTATGAGAGTCCACTTGACATCAAAGAGACATGCTAGATCCGAGAAGCTGATGAAGGAGAACAGGCTGAAGTACGCAATGAACAGCGATGGTGA
GATAGAGAACCAGGAGACCGCAGGAGAGATGAATGCTCGAATCATCGCCATTGCAGATGAAAAATCAAAGAGTAAGAGGAAAAACAAAGGAAGACAGCGG
CAGAAGAACAGGATGAGAAAGAAGAAAACGGAAGGTGCTCCAAAGGTGGAGAGCAAAACTAAGGAATCGACAGGCGAACTCGCGAAGAAAAGGCGAAAGA
AATGA
AA sequence
>Lus10017621 pacid=23155467 polypeptide=Lus10017621 locus=Lus10017621.g ID=Lus10017621.BGIv1.0 annot-version=v1.0
MIKRQFYRLEHGDKDEPSSDSSYSSDSDVEAEASENSDQDDAVADDADSQDGNCSTSSGYVSEDSSANEINDDPSDYESEDDKESDRSFSKPNDRKGVST
IVKGTAPVDIPHCVMKFKSVYRCRICPRIICLTDQTMRVHLTSKRHARSEKLMKENRLKYAMNSDGEIENQETAGEMNARIIAIADEKSKSKRKNKGRQR
QKNRMRKKKTEGAPKVESKTKESTGELAKKRRKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G60640 unknown protein Lus10017621
[exp]
0 1
AT1G77470 EMB2810, RFC5, ... replication factor C 5, EMBRYO... Lus10025689
[exp]
11.7 0.7307
AT4G32910 unknown protein Lus10011625
[exp]
24.9 0.7157
AT5G54580 RNA-binding (RRM/RBD/RNP motif... Lus10014802
[exp]
49.2 0.6795
AT3G04710 TPR10 tetratricopeptide repeat 10, a... Lus10006559
[exp]
50.8 0.6722
AT3G25440 LOH1 LAG One Homologue 1, RNA-bindi... Lus10020391
[exp]
53.3 0.6888
AT2G03430 Ankyrin repeat family protein ... Lus10036968
[exp]
63.8 0.6527
Lus10023751
[exp]
86.2 0.6612
AT1G69630 F-box/RNI-like superfamily pro... Lus10024695
[exp]
90.7 0.6692

Lus10017621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.