Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66740 292 / 8e-102 AtSP7, SGA2, ASF1A ANTI- SILENCING FUNCTION 1A, ASF1 like histone chaperone (.1) AT5G38110 289 / 2e-100 SGA1, SGA01, ASF1B anti- silencing function 1b (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033579 [exp] 395 / 1e-142 AT5G38110 295 / 2e-102 anti- silencing function 1b (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094400 [exp] 326 / 3e-115 AT5G38110 294 / 2e-102 anti- silencing function 1b (.1) Potri.017G121100 [exp] 322 / 1e-113 AT1G66740 285 / 3e-99 ANTI- SILENCING FUNCTION 1A, ASF1 like histone chaperone (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF04729 [flax] [poplar] ASF1_hist_chap ASF1 like histone chaperone
Representative CDS sequence Show only first row Show all	>Lus10017622 pacid=23155549 polypeptide=Lus10017622 locus=Lus10017622.g ID=Lus10017622.BGIv1.0 annot-version=v1.0 ATGAGTGTTGTGAACATCACCAACGTCACTGTTCTGGATAATCCGGCCCCTTTCTCTTCCCCTTTTCAGTTCGAGATCTCGTATGAGTGCTTGACTCCTC TTAAAGATGATCTGGAATGGAAGCTAATCTATGTGGGTTCTGCTGAAGACGAAACATACGATCAACTTTTAGAAAGTGTACTTGTCGGGCCAGTCAATGT CGGCAACTATCGCTTTGTCTTGCAGGCTGACCCTCCAGACTCGTCCAGGATCCGTGAAGAAGACATCATCGGTGTGACAGTACTCTTGCTGACATGCTCC TATCTGGGTCAGGAATTCATTCGAGTCGGCTACTATGTAAACAATGACTATGAAGAAGAGCAACTAAGAGAGGAGCCTCCGCCAAAGGTGTCGATCGACA AGGTTCAAAGAAATATCTTGTCTGACAAACCCAGGGTTACCAAGTTCCCAATCAACTTCTATCCAGAAAACGGTGAAGGTGCAGAGGAGCAAGCACCTCC TAATGATCAACCCGCTGAAACGCCCACCGAAACCGAAGCGAAAGATGAAGAGCAACCTCTTCCCTCATCTCCTGAGCTCTCTGCAGCAGATGTAAAGGAA CTGTAG
AA sequence Show only first row Show all	>Lus10017622 pacid=23155549 polypeptide=Lus10017622 locus=Lus10017622.g ID=Lus10017622.BGIv1.0 annot-version=v1.0 MSVVNITNVTVLDNPAPFSSPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDSSRIREEDIIGVTVLLLTCS YLGQEFIRVGYYVNNDYEEEQLREEPPPKVSIDKVQRNILSDKPRVTKFPINFYPENGEGAEEQAPPNDQPAETPTETEAKDEEQPLPSSPELSAADVKE L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66740		AtSP7, SGA2, AS...	ANTI- SILENCING FUNCTION 1A, A...		Lus10017622 [exp]	0	1
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005444 [exp]	4.1	0.9246
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10023754 [exp]	12.0	0.8867
AT5G45590			Ribosomal protein L35 (.1)		Lus10010409 [exp]	12.4	0.8880
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	14.0	0.8970
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	15.5	0.8949
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10008176 [exp]	17.3	0.9001
AT1G15320			unknown protein		Lus10035916 [exp]	18.3	0.8791
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	21.8	0.8973
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10040855 [exp]	22.7	0.8527
AT3G58530			RNI-like superfamily protein (...		Lus10012294 [exp]	26.5	0.8884

Compare expression of checked genes

Lus10017622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.