Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66730 1543 / 0 AtLIG6 DNA LIGASE 6 (.1) AT1G08130 494 / 3e-157 ATLIG1 DNA ligase 1 (.1) AT1G49250 416 / 9e-130 ATP-dependent DNA ligase (.1) AT2G45700 219 / 1e-59 sterile alpha motif (SAM) domain-containing protein (.1) AT3G26680 192 / 2e-52 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) AT1G27410 120 / 2e-28 DNA repair metallo-beta-lactamase family protein (.1) AT5G57160 91 / 6e-18 ATLIG4 DNA ligase IV (.1) AT1G19025 80 / 5e-15 DNA repair metallo-beta-lactamase family protein (.1) AT5G17360 73 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033580 [exp] 634 / 0 AT1G66730 456 / 1e-146 DNA LIGASE 6 (.1) Lus10016149 [exp] 503 / 2e-160 AT1G08130 1015 / 0.0 DNA ligase 1 (.1) Lus10021418 [exp] 496 / 2e-157 AT1G08130 1015 / 0.0 DNA ligase 1 (.1) Lus10038078 [exp] 234 / 3e-64 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10013876 [exp] 59 / 2e-08 AT1G19025 478 / 7e-165 DNA repair metallo-beta-lactamase family protein (.1) Lus10020013 [exp] 57 / 2e-07 AT5G57160 1352 / 0.0 DNA ligase IV (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094200 [exp] 1792 / 0 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.009G005900 [exp] 521 / 2e-167 AT1G08130 1073 / 0.0 DNA ligase 1 (.1) Potri.014G139600 [exp] 215 / 3e-60 AT3G26680 556 / 0.0 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) Potri.006G218300 [exp] 221 / 5e-60 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.013G149650 [exp] 100 / 4e-22 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1) Potri.018G141900 [exp] 84 / 8e-16 AT5G57160 1372 / 0.0 DNA ligase IV (.1) Potri.013G121700 [exp] 72 / 2e-13 AT1G27410 315 / 3e-107 DNA repair metallo-beta-lactamase family protein (.1) Potri.002G235950 [exp] 59 / 8e-11 AT1G66730 62 / 4e-13 DNA LIGASE 6 (.1) Potri.007G106700 [exp] 65 / 3e-10 AT1G19025 571 / 0.0 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121201 [exp] 50 / 2e-07 AT1G27410 100 / 1e-26 DNA repair metallo-beta-lactamase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04679 [flax] [poplar] DNA_ligase_A_C ATP dependent DNA ligase C terminal region CL0398 [flax] [poplar] RMMBL_DRMBL PF07522 [flax] [poplar] DRMBL DNA repair metallo-beta-lactamase CL0078 [flax] [poplar] DNA_ligase PF01068 [flax] [poplar] DNA_ligase_A_M ATP dependent DNA ligase domain CL0078 [flax] [poplar] PF04675 [flax] [poplar] DNA_ligase_A_N DNA ligase N terminus
Representative CDS sequence Show only first row Show all	>Lus10017623 pacid=23155455 polypeptide=Lus10017623 locus=Lus10017623.g ID=Lus10017623.BGIv1.0 annot-version=v1.0 ATGTCTTCTCCTCAATCCATAGACTCTCTCCTTCTCCACCGCCGCGCTCTCTCTTCCCTCTCCCTCCCTACCCCTCCCACCCATCCAGTTTCTTCTTCAC CTCTCCCTTCTTCTCTACCTCCTTCCAAATTCATCCCCGGCACCCGCTTCCTCGTCGACGCCTTCCGCCTCGCCTCCGCCGCCGTCCCTTCCTCCTCTTA CTTCCTTTCTCACTTCCATTCCGATCATTACTCAGGTCTTTACCCTAACTGGTCCCAGGGCATCATCTTCTGTTCGCAAATAACCGCCGATCTAGTGACT AGAGTTCTGAAGATTCCGCAGCAGTTCGTCTTCTCATTGCCTTTACGAGAGACAGTGATCATCGACGGCTCTGAAGTCACACTCGTGGATGCTAATCACT GCCCAGGAGCTGTTCAGTTCTTGTTCAAGGTTCCGCCGGCCGGCAAGGATTCCACTGGTTTTCAAATGTATGTCCATACCGGTGATTTTAGATACTGTGG CTCAATGAGTGAAGACGTTCTGTTGCGTGGATTTATCGGATGCGACGCTGTTTACTTGGATACTACTTATTGCAACCCGAAATTTGTGTTCCCGGCTCAA GAAGAGGCTGTTGATTATGTAGTTAATGTGATTGAAAATGTCCGTAAGGAATCTACGTCTGTTGGTATGGAGAAGAAAGTCTTGTTTCTTATTGCAACTT ATGTGATTGGCAAGGAAAGGATTCTGCTCGAGACTGCACGGAGGTGTAAAACCAAAGTGCTCGTGGATGGGAGAAAAATGGAGATTTTGCGGGTTTTAGG CTACGGGGAGACTGAGGGATTTACAGAGGACAAGCTTGAGAGTGACGTTCATGTTGTTGGTTGGAATGTGTTAGGTGAGACTTGGCCTTATTTTCGTCCG AATTTTGTGAAGATGACTGAGCTTATGGAAGAAAGAGGGTACTCTAGAGTGGTTGGTTTTGTTCCTACTGGATGGACTTACGAAGTTAAGCGGAATAAGT TCTCTGTGAGGAGGAAGGATTCGTGTGAGGTTCATCTTGTGCCGTATAGTGAACATTCAAATTATGATGAACTTAGAGAGTATGTGAAGTTCTTGCATCC GAAACGTGTTATTCCTACAGTAGGCGTGGATGTTGAGAAACTTGATAGCAAAGACGTTCTTAAAATGCAGAAACATTTTGCTGGGTTGGTTGATCAGACG GCCAACAAGAAAGAATTCTTGACGAGTTTCCTTCGTGGATGTACTGGCAGCAATAAAAAAATGGGAACTGATATTTTATCTGAAGTCCAGAAAATAGAGG AGCATTCTGATACTGTGGAAGATGCAGCTCCAATAGTGGTTTCAAACAGTTTGGAAATTCAGCAAGCACCTGATTCAGTAGATTTAGCTATACTGGATGA TGAGGCAACGGAGAGAATCGTAAAGGAGTTGATTGATTGTTTGCCTACTTGGGTTACTCGTGACCAGATGTTACAATTGGTTAGCAGATCAGGGAGAAAT ATTGTTGCAGCAGTTTCCAATTTCTATGAACGGGAAACAGAATTCCATGAACAAGTGGTTTCTTGCAAGCCTTCCATCTCCGAGCCCCAGATTGATGCAC ATAACTCATTTGATTTACTCTTAAAGCCTGATTCCATCTCCAAGACGGTTAATCTAGGGAAATCAGGAAGTTTGCTCAGTCAAACTCCCAAGTCTTCTGG TGTAAAATCTTCAACCAAGAGTGGCTCTTCCCCTGCAAAAAGGAAGAGGAACATGGATGTCAAGACCAACAAAAAAGGTAAAATTACTGCCAAAATTGAG TCCGGTGGGTCGAAGCAATCCACCATCACAAAGTTCTTCAGTAAAAAAGTTCCCAATACTTCTGAAGATAGTAAGAACCAAGAAAAAACTGAAGTACTCC ATGGAGATGCAAGCTTGTTGCTTGATGAGGATGCAAACCTGCATAAAGATGAGATAGGTAAGTTTGTTCAGATTATCGGTGGTAATGATACGCTTAGAAG CTACGCTGCCACTATATTAGAGAAGACCAAGGGGGATATTAATAAGGCTCTGGATATACATTATGGTAATCCTGAGAGTATTCCTGGTAAAATTTTTGAG AGGTTGGCAGTATCTGACAAATTGGTTCAGCCCCAGAGTGTTACTAATGAGCGGTCTTATGCCCAGGGTAAAACTTCATTGCATGAAGGCGGCGTTGGGT TTGTTGTATCAGTGAAAGAACCAGCTGTAGAATGTTCAGATGCTATTCTTGTAGCCCTTCCAGCAGAGAAATACGACCCCATAAAGCATGCTTGCTGGAA AACTGGCCAACCTGCACCATATATTCATCTTGCACGGACCTTTGATCTGGTTGAGGCTGAAAAAGGGAAGATTAAGGCCACTTCGATTCTGTGCAATATG TTCAGAAGTATACTGGCTTTGTCTCCTGATGATCTGTTGGCTGCTATCTATCTGTGCACAGACAAGATTGCTGCTGACCATGAGAGTGTGGAATTAAACA TTGGGGGTAGCTTGGTCACATCAGCACTGACAGAGGCATGCGGACCTAGTGCATCTGAAATAAGGGAAAAGTATAACAACGTTGGGGATCTTGGTGATGT GGCGCAGTTATGCTGGCAAACAAAGAAAAGACAGAAACTACTTGCTCCGACTTCCCCACTTAGTATTAGAGATGTGTTTTCTGTTCTTCACAAGATAAGC TCTCAAACAGGCAGTAAAAGTACTGGTCGAAAGAAGAGCCTCATTGTGAATATGATGTGTGCTTGCCAGGAGAATGAAATAAAATTTCTTGTTAGAACTT TGGTAAGGAACCTACGGATTGGAGCAATGATGAAAACAATTCTACCTGCTCTGGCCCAAGCAGTTGCAATGAATTCCTTGGCTAGCTCTTCAGATAAAAA TAGCTCTGCGAATGTAAAAGAAATACTGCAGGGCCTTTCTGCAGCAGTTGTTGAAGCTTATAATATACTTCCTAACCTGGGTTTGCTTGTTCCATCACTT GTAACAAATGGCATTGGATTTTCATCGTCGACCTTGTCTATGGATCCTGGAACACCAATCAAACCCATGCTTGCCAAAATCACAAATGGGGTTCCTCACG TGCTGAAGTCATTTGAAAATAAAGCACTCACATGCGAATTCAAGTATGATGGTCAACGCGCCCAAATTCATAGACTATCAAATGGAACTATACGTGTCTT TTCACGAAATGGAGATGAAACCACATCAAGATTTCCGGATTTAATCAATATTGTTGAGGGGTCTCGTAATCTAACAACTGATACTTTCATTATTGATGCG GAGGTTGTTGCAGTTGATAGGAAAAATGGCTGCAAGCTCATGTCCTTCCAACAACTATCTTCAAGAGAAAGAGGGGGGAAAGATTCCTCGGTCACATTGG AGAATATTAAGGTGGAAATCTGCTTGTTTGTCTTTGACATCATGTTTGCCAATGGAGAGCAGCTGTTGAAACTTTCCCTTCGTCAAAGACGAAAATACTT GAAGGATTTATTTTCAAATGTGAGGCCAGGTTATTTTCAATATGCGGAAGAAATGACGGTTGAGGCAGATGAAGTTCATTTGAGCAATGATTCTACCTTA GAAAGGATGAACTCTTTCCTTGAAGATGCATGGCGCTGTTCATGTGAAGGGATCATGGTGAAGACTCTAGATGAAGATGCTGGTTATTCTCCATCGAAAC GTGCTGATAGCTGGTTAAAGGTTAAACGAGACTATGTGGAAGGTTTGGGTGATTCTCTTGATTTAGTTCCAATTGGTGCTTGGCATGGAAATGGAAGGAA AGCAGGATGGTACAGTCCATTCCTTATGGCATGTTACAACCACGAGACTGAAGAGTTCCAATCCATTTGCCGCGTCATGTCTGGTTTTTCAGACACCTTC TACAAAGAGATGAAAGAGTTCTTTTCCGGAGATAGAATATTGTCCAAAAAGCCGACGTATTATCGAACTGGGGAAGCACCGGACATGTGGTTTTCTGCAG AGGTTGTGTGGGAAATAAGAGGTGCAGACTTGACAGTTTCTCCAGTTCACCAAGCAGCTGTTGGTTTAGTTCACGAATCCCGTGGCATCTCGATCAGGTT CCCCAGATTCGTCAGGTCAGCGGCTGATAGGAACCCAGAAGAATGTAGCAGCGCTAGTGATGTTGCTCAGATGTTCAATGCCCAGACGCGCAAAATGGGG TCGGCGGATGGTGATTGA
AA sequence Show only first row Show all	>Lus10017623 pacid=23155455 polypeptide=Lus10017623 locus=Lus10017623.g ID=Lus10017623.BGIv1.0 annot-version=v1.0 MSSPQSIDSLLLHRRALSSLSLPTPPTHPVSSSPLPSSLPPSKFIPGTRFLVDAFRLASAAVPSSSYFLSHFHSDHYSGLYPNWSQGIIFCSQITADLVT RVLKIPQQFVFSLPLRETVIIDGSEVTLVDANHCPGAVQFLFKVPPAGKDSTGFQMYVHTGDFRYCGSMSEDVLLRGFIGCDAVYLDTTYCNPKFVFPAQ EEAVDYVVNVIENVRKESTSVGMEKKVLFLIATYVIGKERILLETARRCKTKVLVDGRKMEILRVLGYGETEGFTEDKLESDVHVVGWNVLGETWPYFRP NFVKMTELMEERGYSRVVGFVPTGWTYEVKRNKFSVRRKDSCEVHLVPYSEHSNYDELREYVKFLHPKRVIPTVGVDVEKLDSKDVLKMQKHFAGLVDQT ANKKEFLTSFLRGCTGSNKKMGTDILSEVQKIEEHSDTVEDAAPIVVSNSLEIQQAPDSVDLAILDDEATERIVKELIDCLPTWVTRDQMLQLVSRSGRN IVAAVSNFYERETEFHEQVVSCKPSISEPQIDAHNSFDLLLKPDSISKTVNLGKSGSLLSQTPKSSGVKSSTKSGSSPAKRKRNMDVKTNKKGKITAKIE SGGSKQSTITKFFSKKVPNTSEDSKNQEKTEVLHGDASLLLDEDANLHKDEIGKFVQIIGGNDTLRSYAATILEKTKGDINKALDIHYGNPESIPGKIFE RLAVSDKLVQPQSVTNERSYAQGKTSLHEGGVGFVVSVKEPAVECSDAILVALPAEKYDPIKHACWKTGQPAPYIHLARTFDLVEAEKGKIKATSILCNM FRSILALSPDDLLAAIYLCTDKIAADHESVELNIGGSLVTSALTEACGPSASEIREKYNNVGDLGDVAQLCWQTKKRQKLLAPTSPLSIRDVFSVLHKIS SQTGSKSTGRKKSLIVNMMCACQENEIKFLVRTLVRNLRIGAMMKTILPALAQAVAMNSLASSSDKNSSANVKEILQGLSAAVVEAYNILPNLGLLVPSL VTNGIGFSSSTLSMDPGTPIKPMLAKITNGVPHVLKSFENKALTCEFKYDGQRAQIHRLSNGTIRVFSRNGDETTSRFPDLINIVEGSRNLTTDTFIIDA EVVAVDRKNGCKLMSFQQLSSRERGGKDSSVTLENIKVEICLFVFDIMFANGEQLLKLSLRQRRKYLKDLFSNVRPGYFQYAEEMTVEADEVHLSNDSTL ERMNSFLEDAWRCSCEGIMVKTLDEDAGYSPSKRADSWLKVKRDYVEGLGDSLDLVPIGAWHGNGRKAGWYSPFLMACYNHETEEFQSICRVMSGFSDTF YKEMKEFFSGDRILSKKPTYYRTGEAPDMWFSAEVVWEIRGADLTVSPVHQAAVGLVHESRGISIRFPRFVRSAADRNPEECSSASDVAQMFNAQTRKMG SADGD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	0	1
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10032785 [exp]	2.0	0.8787
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	4.5	0.8361
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	5.3	0.8715
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10033838 [exp]	7.0	0.8444
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	7.7	0.8655
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	11.0	0.8508
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	12.2	0.8603
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	12.5	0.8708
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10011581 [exp]	13.5	0.8319
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	16.7	0.8304

Compare expression of checked genes

Lus10017623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.