Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 390 / 9e-134 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 382 / 8e-131 Terpenoid synthases superfamily protein (.1) AT3G14530 333 / 8e-112 Terpenoid synthases superfamily protein (.1) AT3G14550 332 / 2e-111 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT2G23800 333 / 3e-111 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 326 / 1e-108 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G29430 322 / 2e-107 Terpenoid synthases superfamily protein (.1) AT3G20160 317 / 2e-105 Terpenoid synthases superfamily protein (.1) AT3G32040 310 / 9e-103 Terpenoid synthases superfamily protein (.1) AT3G14510 305 / 1e-101 Polyprenyl synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017625 [exp] 546 / 0 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 523 / 0 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 454 / 1e-158 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 419 / 2e-145 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 417 / 2e-144 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 384 / 1e-133 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 388 / 1e-132 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 385 / 1e-131 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009136 [exp] 256 / 9e-85 AT2G18620 177 / 1e-55 Terpenoid synthases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 437 / 1e-152 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 404 / 2e-139 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 400 / 6e-138 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 397 / 1e-136 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 391 / 2e-134 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.009G139600 [exp] 223 / 4e-69 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.004G179628 [exp] 222 / 1e-68 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 113 / 2e-27 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.015G043400 [exp] 94 / 4e-21 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.011G099500 [exp] 80 / 5e-16 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10017624 pacid=23155493 polypeptide=Lus10017624 locus=Lus10017624.g ID=Lus10017624.BGIv1.0 annot-version=v1.0 ATGTCAAGCCAGCCAGCCAAGTTTGATGCTTGTTATAATTTTCTTAAAAAACCCACCAAAGAAGACTACTTTTCCACCAAATCAGTCCAAACTCCCACAC CAAAGCATCGTCCCATTTCTTCCCAACAGCATATAATCTCCCCCGTCATTAATAAACCCCCCAAAAACTCAACTTTCCCACTCATCAAACCACCAAAAAA CAGAGAGAATTACACCAAAGAGGCAGAGCTAACATCATCCATGGCTTCTTCCTTCTCAATCTCATCACCAACTCCAACCATGATCTCCTCCAAAAACGTT CAACAATCCCAATATTCCATCTTCCTCCAGAAACCCTTCACTCACAATCCTCTAATCTCCAACAAATCATCCATTACCAAGCTCCACTCCCTCAGAGTGT TCCGCGCTTTTGCCTCTACCAGTACCCCTGTCGTTCCTCTGCATCAATCTGTCGACCCAACAACCACTGCCGTCCCGGATTTCGACTTTGAGAGCTACAT GGTGACAAAGGCAAACCACGTGAACAAGGCGTTGGACGAGGCCATCCCCATCCAGCGCCCTGTGAAAATCCACGAGGCCATGAGGTACTCCCTTCTGGCT GGAGGCAAGAGGGTCCGTCCAGTGCTTTGTATCGCCGCTTGTGAGATGGTTGGTGGCGATGAGTCGTTGGCGATGCCTATGGCTTGCGCCACCGAGATGA TTCACACTATGTCGTTGATTCACGACGACCTTCCTTGTATGGATGACGATGATCTCCGTCGTGGTAAGCCTACTAACCACAAGAAGTACGGTGAGGATAC TGCTATCCTTGCCGGTGATGCTCTGTTATCGTTCTCGTTTGAGCATGTGGCGGTTGAGACGCCTAAGATTGTGTCGCCTGAGAGAGTTGTACGGTCGATT GCTGAGCTGGGATCTGCTGTCGGGTCCGCTGGGCTTGTTGCCGGCCAGATTGTCGACATTGCTAGTGAAGGCGAGAAAGTGAGTTTAGAGGAACTGGAAT ACATCCACATCCACAAAACCGCGAGGCTATTGGAGGCGGCGGTGGTTTGTGGCGCCATCCTCGGCGGAGCCGACGAGGAGAGCGTGAAGAAGGTAAGGAA GTACTCGAGGTGCGTGGGATTGTTGTTCCAAGTAGTGGATGATATTCTGGACGTGACAAAGTCGTCAGAGGAACTAGGAAAGACAGCCGGCAAGGATTTG GCGAGCGACAAGGCTACTTATCCCAAGCTCTTGGGGCTGGACGGTGCCCGGAGGTTCGCCGCCGAGCTTGTTGAAGAAGCCTATAAGGAATTGGCCGGAT TTGATCCCGTTAAGGCCGCGCCGCTCTACCATTTCGCTAATTACATCGCTACACGACAAAATTAG
AA sequence Show only first row Show all	>Lus10017624 pacid=23155493 polypeptide=Lus10017624 locus=Lus10017624.g ID=Lus10017624.BGIv1.0 annot-version=v1.0 MSSQPAKFDACYNFLKKPTKEDYFSTKSVQTPTPKHRPISSQQHIISPVINKPPKNSTFPLIKPPKNRENYTKEAELTSSMASSFSISSPTPTMISSKNV QQSQYSIFLQKPFTHNPLISNKSSITKLHSLRVFRAFASTSTPVVPLHQSVDPTTTAVPDFDFESYMVTKANHVNKALDEAIPIQRPVKIHEAMRYSLLA GGKRVRPVLCIAACEMVGGDESLAMPMACATEMIHTMSLIHDDLPCMDDDDLRRGKPTNHKKYGEDTAILAGDALLSFSFEHVAVETPKIVSPERVVRSI AELGSAVGSAGLVAGQIVDIASEGEKVSLEELEYIHIHKTARLLEAAVVCGAILGGADEESVKKVRKYSRCVGLLFQVVDDILDVTKSSEELGKTAGKDL ASDKATYPKLLGLDGARRFAAELVEEAYKELAGFDPVKAAPLYHFANYIATRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	1.0	0.9973
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	2.0	0.9964
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	2.2	0.9943
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	3.5	0.9944
AT4G37290			unknown protein		Lus10010255 [exp]	4.2	0.9954
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	4.9	0.9939
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	6.5	0.9902
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	7.0	0.9932
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	7.4	0.9908
AT2G01340		At17.1	unknown protein		Lus10016709 [exp]	8.5	0.9767

Compare expression of checked genes

Lus10017624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.