Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 423 / 5e-148 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 413 / 1e-144 Terpenoid synthases superfamily protein (.1) AT3G14530 372 / 3e-128 Terpenoid synthases superfamily protein (.1) AT2G18640 372 / 4e-128 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G14550 367 / 3e-126 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT2G23800 366 / 1e-125 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G20160 353 / 5e-121 Terpenoid synthases superfamily protein (.1) AT3G29430 351 / 5e-120 Terpenoid synthases superfamily protein (.1) AT3G14510 341 / 3e-117 Polyprenyl synthetase family protein (.1) AT3G32040 342 / 1e-116 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017624 [exp] 598 / 0 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 545 / 0 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 486 / 4e-173 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 454 / 3e-160 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 441 / 3e-155 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 418 / 4e-146 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 409 / 6e-145 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 405 / 4e-141 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009136 [exp] 248 / 1e-82 AT2G18620 177 / 1e-55 Terpenoid synthases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 475 / 9e-169 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 444 / 7e-157 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 441 / 2e-155 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 428 / 3e-150 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 424 / 2e-148 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.009G139600 [exp] 257 / 3e-83 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.004G179628 [exp] 255 / 2e-82 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 125 / 3e-32 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.015G043400 [exp] 122 / 6e-32 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1) Potri.011G099500 [exp] 94 / 5e-21 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10017625 pacid=23155446 polypeptide=Lus10017625 locus=Lus10017625.g ID=Lus10017625.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCTTCACATCAACCCTAACCATCTCCTCCAAAAATGTTCAATATTCCATCTTCCTCCACAAGCCCTTCACTCACAATCCCATAATAATCT CCAGAGAATCATCAATTACTAATTCCACATCCCCCCGATTCAATCTCCGTGCCTCTGCCCCTACCACCCCTGCCGCTCCTCTGCATCAAGCCGTCGACCC GACGACCACCCCCGATTTCGACTTCGAGAGCTACATGGTGACGAAGGCGAACCAGGTGAACAAGGCGCTGGACTGGGCCATCCCGCTCCGTCGCCCAGTC AAAATCCACGAGGCAATGAGGTACTCCCTCCTTGCAGGAGGCAAGAGGGTCCGCCCGATCCTCTGCATCGCGGCCTGCGAGATGGTCGGGGGAGACGAGG CGTTGGCAATGCCTATGGCTTGCGCCACCGAGATGATCCACACCATGTCGTTGATGCACGACGACCTTCCTTGCATCGATAACGATGACCTCCGCCGCGG CAAGCCCACTAGCCACAAGAAGTACGGCGAGAATGTTGCTCTGCTCGCCGGAGACGCACTCTTAGCGTTCTCGTTTGAGCACGTGGCGATGGAGACGCCG AAGGTGGTGCCCCCTGAGAGAGTTGTGCGATCGATTGTTGAGCTGGGATCTGCCGTCGGGTCCACCGGGCTTGTGGCCGGCCAGATAGTCGACATTGCTA GTGAAGGCGAAACAGTGAGTTTGGAGGAACTGGAATACATTCATATCCAGAAAACTGGAAGGCTGCTGGAGGCGGCGGTGGTTTGTGGCGCCATTCTCGG CGGAGCCGACGAGAAGAGTGTGAAGAAGGTGAGAAAGTACGCAAGGTGCGTGGGATTGCTATTCCAAGTTGTGGATGATATTCTGGACGTGACAAAGTCG TCGGAACAATTAGGAAAGACAGCCGGCAAGGATCTTGCGACCGATAAGGCTACTTATCCCAAGCTGTTGGGTCTGGACGGTGCCCGGAGATTCGCCGCCG ACCTCGTCGATGAAGCGAACAAGGAGTTGGCCGGCTTTGATCCCGCTAAGGCCGCGCCGCTCTACCATTTCGCTAATTACATCGCTACACGACAAAATTA G
AA sequence Show only first row Show all	>Lus10017625 pacid=23155446 polypeptide=Lus10017625 locus=Lus10017625.g ID=Lus10017625.BGIv1.0 annot-version=v1.0 MASSFTSTLTISSKNVQYSIFLHKPFTHNPIIISRESSITNSTSPRFNLRASAPTTPAAPLHQAVDPTTTPDFDFESYMVTKANQVNKALDWAIPLRRPV KIHEAMRYSLLAGGKRVRPILCIAACEMVGGDEALAMPMACATEMIHTMSLMHDDLPCIDNDDLRRGKPTSHKKYGENVALLAGDALLAFSFEHVAMETP KVVPPERVVRSIVELGSAVGSTGLVAGQIVDIASEGETVSLEELEYIHIQKTGRLLEAAVVCGAILGGADEKSVKKVRKYARCVGLLFQVVDDILDVTKS SEQLGKTAGKDLATDKATYPKLLGLDGARRFAADLVDEANKELAGFDPAKAAPLYHFANYIATRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017625 [exp]	0	1
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	2.2	0.8941
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012980 [exp]	3.2	0.8886
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10010942 [exp]	4.9	0.8723
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	7.9	0.8790
					Lus10039034 [exp]	8.9	0.8605
					Lus10006529 [exp]	11.5	0.8529
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	12.4	0.8529
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10041370 [exp]	12.7	0.8113
					Lus10035557 [exp]	13.3	0.8529
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	14.1	0.8529

Compare expression of checked genes

Lus10017625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.