Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37730 102 / 5e-28 unknown protein AT1G70780 96 / 4e-26 unknown protein AT1G23150 84 / 1e-21 unknown protein AT4G22758 51 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009131 [exp] 116 / 6e-34 AT1G70780 92 / 1e-24 unknown protein Lus10034416 [exp] 102 / 1e-28 AT1G70780 168 / 8e-55 unknown protein Lus10031920 [exp] 102 / 2e-28 AT1G70780 172 / 4e-56 unknown protein Lus10019143 [exp] 99 / 4e-27 AT1G70780 167 / 4e-54 unknown protein Lus10035084 [exp] 97 / 1e-26 AT1G70780 171 / 7e-56 unknown protein Lus10033584 [exp] 96 / 1e-26 AT5G37730 78 / 2e-19 unknown protein Lus10027525 [exp] 91 / 1e-23 AT1G70780 104 / 3e-29 unknown protein Lus10039287 [exp] 87 / 3e-22 AT1G70780 104 / 4e-29 unknown protein Lus10020544 [exp] 53 / 5e-09 AT2G27830 181 / 3e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G089700 [exp] 116 / 4e-34 AT5G37730 108 / 1e-30 unknown protein Potri.017G125300 [exp] 114 / 3e-33 AT1G70780 109 / 2e-31 unknown protein Potri.010G110800 [exp] 105 / 8e-30 AT1G70780 188 / 9e-63 unknown protein Potri.008G131600 [exp] 102 / 9e-29 AT1G70780 183 / 2e-60 unknown protein Potri.003G116300 [exp] 56 / 3e-10 AT2G27830 125 / 2e-36 unknown protein Potri.004G188600 [exp] 55 / 6e-10 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 52 / 6e-09 AT2G27830 183 / 6e-59 unknown protein Potri.003G116200 [exp] 50 / 5e-08 AT4G22758 131 / 5e-37 unknown protein Potri.001G116200 [exp] 43 / 2e-05 AT4G22758 117 / 5e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017628 pacid=23155529 polypeptide=Lus10017628 locus=Lus10017628.g ID=Lus10017628.BGIv1.0 annot-version=v1.0 ATGGGAGCCTCGTCGGCGGCGGCGGCGAAGAATGAGAAGAAGAGTGGTAGGAATAACAAGTTACTGGTGAGGGTGAATGTGCTTGGGAGCACGGGGCCGA TAAGGTTGGTGGTGAAGGAGGATGACGTGGTGGGCGCGGTGATCGAGTCGACGTTGAAGAGCTATGCTAAGGAAGGCAGAGTTCCTTCACTTGGATGTGA AGCTAGCAACTTCATTCTCTACTCTTCTAATGGCACTTTTGATTCCAAAGAGTTGAATCCAAAGGAAGCAATAGGAAGGAATGGAGGAAGGAACTTCGTG ATGTGCAAGAAGCAATTGAATCCCCAGATGACTGAAGGGAGGCCGCCGTTGCAGAAGTCATCGTCAGGCTTGAAAGCTTGGCTTACCAAGTCTTTCACTA CTTTGAAGAGATTATGA
AA sequence Show only first row Show all	>Lus10017628 pacid=23155529 polypeptide=Lus10017628 locus=Lus10017628.g ID=Lus10017628.BGIv1.0 annot-version=v1.0 MGASSAAAAKNEKKSGRNNKLLVRVNVLGSTGPIRLVVKEDDVVGAVIESTLKSYAKEGRVPSLGCEASNFILYSSNGTFDSKELNPKEAIGRNGGRNFV MCKKQLNPQMTEGRPPLQKSSSGLKAWLTKSFTTLKRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37730			unknown protein		Lus10017628 [exp]	0	1
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10041807 [exp]	1.0	0.9304
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Lus10031192 [exp]	4.5	0.8088
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Lus10031770 [exp]	7.9	0.7350
AT2G32190			unknown protein		Lus10031782 [exp]	10.5	0.7521
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10037358 [exp]	15.0	0.7634
AT2G39855			unknown protein		Lus10009870 [exp]	20.6	0.7632
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	22.4	0.7497
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	29.7	0.7321
AT1G64870			unknown protein		Lus10009296 [exp]	34.5	0.6725
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039863 [exp]	39.5	0.7283

Compare expression of checked genes

Lus10017628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.