Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24200 162 / 8e-41 Transcription elongation factor (TFIIS) family protein (.1) AT3G48050 65 / 2e-10 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 64 / 7e-10 BAH domain ;TFIIS helical bundle-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033586 [exp] 1339 / 0 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 686 / 0 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10009128 [exp] 666 / 0 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10033410 [exp] 75 / 3e-13 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 67 / 4e-11 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241400 [exp] 524 / 5e-171 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.002G020000 [exp] 519 / 3e-169 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.012G077700 [exp] 78 / 2e-14 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 76 / 9e-14 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 74 / 3e-13 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 72 / 2e-12 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017630 pacid=23155524 polypeptide=Lus10017630 locus=Lus10017630.g ID=Lus10017630.BGIv1.0 annot-version=v1.0 ATGAAAGATGGCCTCATGGTCCCTTCTCGTGTACATGAGCTGCTTTCTGTAATGAGGAAGGAGAAAGATTCTACTGTTAAGAATATTGGTGATGCAATTA GGCAGTGGACTGCGGTTGCCAGCACAATTTCTGTCACTGAGAATAAAGAGTGTCTAGATCTTTTTATCCAATTAGATGGACTCTGGTATTTTGATAACTG GCTAAAGGATGTCCAGAGTTACAGTAGAGCTACAAGTGATGGGCTTACAGAAGAATCTATCACAGTGCTGTTAAGAGCAGTAGAAAAGCTGCAAATCGAC AAAGCCAGGTCTTTTTCTTCAGGGATCTTCACAACTGTTAATAATCTTCTTCACCACTCTTGCTCTCGAGTTCAGGATAGAGCTAGATCACTTTTGGATT CTTGGAAGCAAGATGAGGATAGTCCTAATATGAAGCGCGATAGCCAGAATGCTCGAGGGATAGATGCTTTTGATGTGTCTGGCAATATTGAAACAGCTAA CAACGAATTTCTGAAAGAAAGTGATGAGACCGAAAGATCTGCAGTAGAGCTTTCCAGTGATGAAGCTACAAAATCAAGAACCATGAATTGTTTTGGAGTG GAGGTTCAAAATGTAGAAATGCACGATGGAAACTGTAGTGAGAAATCTGTGACTGAATCTGTCATGTCAAATTGCAGTCAAGCCGGCACTTCTTTGAAAG AGAAGATCTCTGTGGCCATTCTAGACGGAGCTGCTTCAACAGAGACTCACATTTCTTCTGTTCAAATGGGACAAGGTGCTGAACCTGAGACAGATGCTAC AAATAATGCTAGCAGCCTATTGGATAGAGCATCCTCCGTTGCCTCTTCGTCCAGTCAAGCAAATATTCAAGAGATCAAGGCAGATTCTACTTTGCGGAAA CATATTGAAGCAGAAGGGGGTGATAAATCTAATAATGCTTCTGCATCTGATGATAATAGAAAAGATATAGGTGCCACTGAAGGTGCAACAGATTATATGC TTGCTATTATTGACCGTAGTCCACCGGTGGTCCATTCGAATTCTAAAGATGATCAACACCTTGATGTCCAGTCCATTCAAGGTGATGACAAAGGACCGAG AACAGCTGGAATTTTGAAGAGTACATCAACGATGAAAGACTATGGGTCTGAACTTGAAAACAAGCAAAGTAGTAATGGAGATGAGAAAGTGGGAGATGCG TATGCTTTCTCTAAATCAGCGCTGGATACCCAGAGTTCCTTCTCAACCAATAAGAAAAAGTCTGATATTAAGTTCGAGAATGGTATTGTTGATGCTTTAG GAGCTGCACGGCAAGTTGCTCAGGAAGTTGAGAGAGAAGTTGTAAATTACAGAGACCCATCGGGCACATCTTCTTCAGAGAAGACCATGGGAAATCTTGG TGAGGAACTTGGTAGCCCCAAATCCATTAGTGGAATACAAGACCAAGCACAGAATCAGTCTTTAAAACCAGTGCCTGACCAAAGCAGTCAATCGCCTAAA TCCAAACGGGGGCGTAACGCAGAGAATAATATTAATGAGTTTCAGTCCTCTCAGCTAACTGAAGCAGTTCGAGAACCAGAAGTTGCAGACAGAGGATTTT GTGGTTTCGATCTCAATGAAGAAGGCACTTCAGATGATGCAGATCGTCCTGCAGACTTGATCTCTACTCCGATTTCTGTCGTATCAGTTTCAAGGCCAGC AGCAGCTTCAGCATCACCTGCAGCCCCATTGCAGTTTGAAGGAACTCTTGGATGGAAGGGGTCAGCAGCTACTAGTGCATTTCGTCCTGCTTCTACAGGG AAGGTTCCAGAGGTTGACACCGACATCGAAACAGGAATAACTTGTATTACTTCGAAACAGAGGCCGGATTGGCTCGACATCGACCTGAATGTCAGTGATG GAGATGACAAGGTAACGGAATTGATGTTGGAAAAGAAAGCTCAATCTTCTTCAGATATGGGTGCAGGTAAATCAGAAAGGCCCTGCCTGGATTTAAACCG TATGAGCGACGATGCAGAGGCTCCCGCGTCAAATCCGCAGAGAGGGGAAGGGCTGTTCTTCCTTCAAAATTTCCATTGTAGTCCGTCTCCTGCCTCTTCA TCTTCATCTTTACGGCCTTCATTAAAGAACTTTGATTTGAATGATAGACCTCTTCTCCATAATGATCCCTCAAACCGGGAAGTGTACCATGGCAAGCTTT CTCAAAGCTCAAGTCTTTATGGAGGAGGGTCCATACAAGGTGACCCCATGATCTCTATCATGGGATCCAAGATTGAAGTTGGCGCTCGAACCGAAGTTAG CAGAAACGACCTCATCCATCAGACTCCATTCATGTTCTTGCCAAATGGTCCTCCATCCATGTCTCTCTCGTCAACGATGTACGGATCTGGAGGTGCTGTC CCGTATATGATGGATTCGCGAGGGTCTGGTATGATACCGCAAATTGCAGGAACTGCCGCTGCTGTGCCTCAATATTCTCAGCAGCATTTCGTCATGAACA TGGCCGGTCCACCCCTCAGTTTAAACGGTGCAGGTCCATCTCAACCAAGTCCCGGTATGAATTTCGGTTTCTCGATCGATGGAGGAGGAGGAGGAAGCAG TAGGGGATTCGGGCAGTTTTTAATCACCGGTCAAGGCAGGTCTTCAGAGGAGCGTTTGGGAATGGTTGGGAAACGTAAGGAACCAGAAGGCGGGTTGGGA CCTTATTCCTTACACTATAAACAACAGATACAGCAACAGCCACCACCTTGGAGATAA
AA sequence Show only first row Show all	>Lus10017630 pacid=23155524 polypeptide=Lus10017630 locus=Lus10017630.g ID=Lus10017630.BGIv1.0 annot-version=v1.0 MKDGLMVPSRVHELLSVMRKEKDSTVKNIGDAIRQWTAVASTISVTENKECLDLFIQLDGLWYFDNWLKDVQSYSRATSDGLTEESITVLLRAVEKLQID KARSFSSGIFTTVNNLLHHSCSRVQDRARSLLDSWKQDEDSPNMKRDSQNARGIDAFDVSGNIETANNEFLKESDETERSAVELSSDEATKSRTMNCFGV EVQNVEMHDGNCSEKSVTESVMSNCSQAGTSLKEKISVAILDGAASTETHISSVQMGQGAEPETDATNNASSLLDRASSVASSSSQANIQEIKADSTLRK HIEAEGGDKSNNASASDDNRKDIGATEGATDYMLAIIDRSPPVVHSNSKDDQHLDVQSIQGDDKGPRTAGILKSTSTMKDYGSELENKQSSNGDEKVGDA YAFSKSALDTQSSFSTNKKKSDIKFENGIVDALGAARQVAQEVEREVVNYRDPSGTSSSEKTMGNLGEELGSPKSISGIQDQAQNQSLKPVPDQSSQSPK SKRGRNAENNINEFQSSQLTEAVREPEVADRGFCGFDLNEEGTSDDADRPADLISTPISVVSVSRPAAASASPAAPLQFEGTLGWKGSAATSAFRPASTG KVPEVDTDIETGITCITSKQRPDWLDIDLNVSDGDDKVTELMLEKKAQSSSDMGAGKSERPCLDLNRMSDDAEAPASNPQRGEGLFFLQNFHCSPSPASS SSSLRPSLKNFDLNDRPLLHNDPSNREVYHGKLSQSSSLYGGGSIQGDPMISIMGSKIEVGARTEVSRNDLIHQTPFMFLPNGPPSMSLSSTMYGSGGAV PYMMDSRGSGMIPQIAGTAAAVPQYSQQHFVMNMAGPPLSLNGAGPSQPSPGMNFGFSIDGGGGGSSRGFGQFLITGQGRSSEERLGMVGKRKEPEGGLG PYSLHYKQQIQQQPPPWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	0	1
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	1.4	0.8856
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10013035 [exp]	2.4	0.8317
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10028452 [exp]	2.4	0.8589
AT4G24200			Transcription elongation facto...		Lus10033586 [exp]	3.3	0.8202
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10034197 [exp]	4.9	0.8484
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	5.9	0.8436
AT5G60750			CAAX amino terminal protease f...		Lus10032326 [exp]	6.2	0.8516
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	10.2	0.7933
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10042439 [exp]	10.6	0.8094
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	10.8	0.8236

Compare expression of checked genes

Lus10017630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.