Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37790 592 / 0 Protein kinase superfamily protein (.1) AT1G66460 568 / 0 Protein kinase superfamily protein (.1) AT1G77280 280 / 4e-85 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 259 / 6e-81 Protein kinase superfamily protein (.1.2.3) AT1G21590 261 / 2e-78 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 248 / 1e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 249 / 3e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G65530 227 / 3e-68 Protein kinase superfamily protein (.1) AT5G57670 229 / 8e-68 Protein kinase superfamily protein (.2) AT3G05140 224 / 4e-67 RBK2 ROP binding protein kinases 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033588 [exp] 890 / 0 AT5G37790 591 / 0.0 Protein kinase superfamily protein (.1) Lus10009125 [exp] 674 / 0 AT5G37790 607 / 0.0 Protein kinase superfamily protein (.1) Lus10028518 [exp] 660 / 0 AT5G37790 592 / 0.0 Protein kinase superfamily protein (.1) Lus10000968 [exp] 271 / 6e-82 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 270 / 1e-81 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 241 / 3e-71 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 238 / 2e-70 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 234 / 3e-70 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10006957 [exp] 227 / 1e-69 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126500 [exp] 670 / 0 AT5G37790 658 / 0.0 Protein kinase superfamily protein (.1) Potri.004G089100 [exp] 658 / 0 AT5G37790 666 / 0.0 Protein kinase superfamily protein (.1) Potri.007G102400 [exp] 271 / 1e-82 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 268 / 3e-81 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 266 / 4e-80 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 256 / 5e-77 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 256 / 1e-76 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 245 / 5e-72 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.009G134700 [exp] 241 / 2e-71 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G096100 [exp] 231 / 2e-68 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017631 pacid=23155442 polypeptide=Lus10017631 locus=Lus10017631.g ID=Lus10017631.BGIv1.0 annot-version=v1.0 ATGGGCGTCTTTCAGGGAAATTGTTCCACAAGCTCCAGCCACCAAAAGCAGTGTCTCCACTGCTCTTCTTCTCTCTCTTCGTCTTGGTCTTCTTCCTCCA TGGCCACGGACCACTGCTGCAACTTTATCACTACGAGAAAAATGGTATCTGGGTTCGGATTATTGTCCTGTTTCCAAGGAAGCAAGCTCGAGAAAAATGG CGGAGAAGAGGAGGAAGCAATGGTAGTCGGGGAATCGGAGCACGAACACAAGGCATGGCTTCTGGCCGAGTCCGGTGCTGAAATTGCGAATGCGGAACCC GACTCGGTTCATTCTTCATTCAGGTTCAGTTTCTGCTCTCAGACGGAGCTTGAATCGATGAATGTAAACAACAACAACAACTCCTCCGTCGCTTCTTCAA CTACGGTGTTGATGGTGAATTTGGACAGTGGATTCAGCTCCGCCGCTCGTAGTAAGGAATGGAGGAGGATTCAGTCGCTGGAGAGGAGTATTTCCCCTGT GTCTAATTCCTTGATTCGGTTTCGCTATAGTGAGATTCTCGCCGCCACCAGTAATTTCTCCCAAGGTAGAGTTTTGGGAAGGGGAGCTATGAGCTTTGTA TACAGAGGAAGAGTTGGGTTGTTAAGAGCTAGTGTGGCTATCAAGAGGCTGGACAAAGAGGACAAAGAGTCTTCCAAGGCATTCTGTAGAGAGTTGATGA TTGCAAGCTCTCTTCATCATCACAACACTGTTCCCCTTGTGGGATTCTGTATTGATCAACAGGAAGGGTTGTTCTTGGTCTACAAGTATGTTTCTGGTGG CAGCTTAGACCGCCATTTACATGATAAGAAGAGAGGACTAGGCTGGTCAGTGAGGTACAAGGTTGCTGTTGGAGTTGCAGATGCCATTGCATATCTGCAT AGTGGGACTGAGAGATGTGTTGTTCATAGAGATATCAAGCCCTCTAACATACTCCTCTCTTCCAAGAACATCCCTAAGCTGTGTGATTTTGGATTGGCGA CTTGGACGTCGTCACCGTGTGTCCCTTTCCTCTGCAAAACTGTCAAGGGAACATTTGGTTACTTGGCTCCAGAGTATTTCCAGCATGGCAAGGTATCTGA TAAGACTGATGTGTATGCTTTTGGGGTGGTCCTCCTGGAGCTAATTACAGGAAGGAAACCAATTGAGGCAAGACGTCCTCCAGGAGAAGAGAATCTCGTT CAATGGGCGAAACCGTTGCTGGGCAAAGGAAAAGGAGCAATCGAGGAGCTGCTCGACCCACGGCTCTCGTGCTCAACATTGCGAAACAGATGTCAAATGA CACAGATGATCCAAGCTGCTGCAGCATGTTTGAGCAACGAAGAATCCCTTAGACCCTCGATAGATGAGATCATAGCGATATTGAGAGGAGACGAAGAGGT TCTAGCATCCGCTGCTCCTATGTTGTTGTGCAGCAGTGGAAGGAGGAAGTCCAACCTGGTTGCAGGCATTATAGATTGCTATCCTCCTCAACCTCGGGAG ACGAGCAGTGAGATGAAGAGTCATTTAGCATTGGCGATGCTCGGAGTTTCGGAGCTTGAGGATGACGATCAGCTCTACTGTCGATGA
AA sequence Show only first row Show all	>Lus10017631 pacid=23155442 polypeptide=Lus10017631 locus=Lus10017631.g ID=Lus10017631.BGIv1.0 annot-version=v1.0 MGVFQGNCSTSSSHQKQCLHCSSSLSSSWSSSSMATDHCCNFITTRKMVSGFGLLSCFQGSKLEKNGGEEEEAMVVGESEHEHKAWLLAESGAEIANAEP DSVHSSFRFSFCSQTELESMNVNNNNNSSVASSTTVLMVNLDSGFSSAARSKEWRRIQSLERSISPVSNSLIRFRYSEILAATSNFSQGRVLGRGAMSFV YRGRVGLLRASVAIKRLDKEDKESSKAFCRELMIASSLHHHNTVPLVGFCIDQQEGLFLVYKYVSGGSLDRHLHDKKRGLGWSVRYKVAVGVADAIAYLH SGTERCVVHRDIKPSNILLSSKNIPKLCDFGLATWTSSPCVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRPPGEENLV QWAKPLLGKGKGAIEELLDPRLSCSTLRNRCQMTQMIQAAAACLSNEESLRPSIDEIIAILRGDEEVLASAAPMLLCSSGRRKSNLVAGIIDCYPPQPRE TSSEMKSHLALAMLGVSELEDDDQLYCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	0	1
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	2.0	0.8831
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10038921 [exp]	2.2	0.8377
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	5.7	0.8741
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	5.7	0.8274
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	10.6	0.8157
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	10.6	0.8289
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10007975 [exp]	10.7	0.8384
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	12.5	0.8379
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10026554 [exp]	16.1	0.8278
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	18.3	0.8334

Compare expression of checked genes

Lus10017631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.