Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13810 216 / 5e-69 Restriction endonuclease, type II-like superfamily protein (.1) AT1G67660 158 / 2e-46 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033589 [exp] 459 / 4e-161 AT1G13810 161 / 4e-45 Restriction endonuclease, type II-like superfamily protein (.1) Lus10010434 [exp] 417 / 3e-147 AT1G13810 216 / 5e-68 Restriction endonuclease, type II-like superfamily protein (.1) Lus10012108 [exp] 205 / 6e-67 AT1G13810 113 / 2e-31 Restriction endonuclease, type II-like superfamily protein (.1) Lus10011377 [exp] 87 / 3e-21 AT1G67660 169 / 1e-53 Restriction endonuclease, type II-like superfamily protein (.1.2.3) Lus10006437 [exp] 86 / 7e-21 AT1G67660 172 / 8e-55 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222500 [exp] 329 / 4e-113 AT1G13810 242 / 1e-78 Restriction endonuclease, type II-like superfamily protein (.1) Potri.008G039800 [exp] 187 / 2e-59 AT1G13810 143 / 2e-42 Restriction endonuclease, type II-like superfamily protein (.1) Potri.010G054800 [exp] 163 / 1e-47 AT1G67660 391 / 7e-136 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF09588 [flax] [poplar] YqaJ YqaJ-like viral recombinase domain
Representative CDS sequence Show only first row Show all	>Lus10017632 pacid=23155531 polypeptide=Lus10017632 locus=Lus10017632.g ID=Lus10017632.BGIv1.0 annot-version=v1.0 ATGGGCACTGCTTCTGAATGTGTGAGAAAATTGAGTCGTTCTGCTTGTGTCTCTCCCCTTAGATCCCATTCGTGGGAATCCGATTCCGCAGTCCTCGAAA AAGCAAGCAGCCTTCAACCATGGTTAAAAAACTGGCAGGACAAGAGGAAGAACAAGCTCACTGCAAGCACATTCGGAGGAGCAATCGGGTTGTGGCGCAA CCGAAGAGTACAACTCTGGTTAGAAAAACTCGGTGCAAAGGAGCCGTTCTCTGGCAACATAGCAACATGGTGGAGCAACATCAAAGAGAAGGAAGCGATC CAGAAGTACGTCGAGATTACGCAGAACGATGTGTACTTCCCGACTTTCCAAGTTTACGACCGCGAGGAGAAGAAAGGTGAAGTTTCAGATGATTGGATAG CAGCTTCACCTGATGGATTGGTTGAGGAAAATCAACATGTGTACGGACTGGATTGCAGAGGAGTGCTGGAGATAAAATGCCCGTATTTCGTCGATATGAG ACTGGCAAAGCCTTGGAAACGAGTCCCTCTTTATTACGTTCCGCAAGCTCAGGGATTAATGGAGATTATGGACAAGGATTGGATGGATTTTTATGTTTGG ACTCCAAAGGGGAGTAAGTTGTTCAGAATGCATAGGGACAGAGAGTACTGGGAGATTTTGAGGTTGGCGCTTTCTGATTTTTGGTTGAAACATGTCGTTC CTGCTAGGGAACTTTGCGATAAACATAAGCTGCAGAATCCTTGCTTGGAGTTGCCTTTGCTCAGGCCGGCTCGTAAACATGAGTATTGTGAGTACATAGT GAACGAGAGCAGGCGGATTGTCGATGAATCCCCCTTGTTGTTTTGCGAAATTCGGAGATGA
AA sequence Show only first row Show all	>Lus10017632 pacid=23155531 polypeptide=Lus10017632 locus=Lus10017632.g ID=Lus10017632.BGIv1.0 annot-version=v1.0 MGTASECVRKLSRSACVSPLRSHSWESDSAVLEKASSLQPWLKNWQDKRKNKLTASTFGGAIGLWRNRRVQLWLEKLGAKEPFSGNIATWWSNIKEKEAI QKYVEITQNDVYFPTFQVYDREEKKGEVSDDWIAASPDGLVEENQHVYGLDCRGVLEIKCPYFVDMRLAKPWKRVPLYYVPQAQGLMEIMDKDWMDFYVW TPKGSKLFRMHRDREYWEILRLALSDFWLKHVVPARELCDKHKLQNPCLELPLLRPARKHEYCEYIVNESRRIVDESPLLFCEIRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13810			Restriction endonuclease, type...		Lus10017632 [exp]	0	1
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10037979 [exp]	1.4	0.7613
AT3G47940			DNAJ heat shock family protein...		Lus10036668 [exp]	2.4	0.7493
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	7.0	0.7773
					Lus10025864 [exp]	10.2	0.6849
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10019622 [exp]	12.0	0.7164
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	14.5	0.7261
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	20.4	0.7076
AT1G16740			Ribosomal protein L20 (.1)		Lus10034785 [exp]	21.4	0.5939
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	21.5	0.7384
AT1G52343			unknown protein		Lus10035888 [exp]	21.5	0.6827

Compare expression of checked genes

Lus10017632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.