Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77360 183 / 1e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 163 / 1e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 162 / 3e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 161 / 6e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 152 / 2e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 145 / 1e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 130 / 6e-33 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G73400 120 / 7e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 115 / 2e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 110 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009123 [exp] 610 / 0 AT1G77360 156 / 1e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028520 [exp] 607 / 0 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10033591 [exp] 504 / 2e-179 AT1G77360 121 / 4e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033590 [exp] 439 / 1e-154 AT3G62470 98 / 2e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 181 / 9e-50 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015741 [exp] 160 / 2e-42 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 155 / 1e-40 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 152 / 5e-40 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 140 / 7e-36 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126600 [exp] 567 / 0 AT1G77360 173 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G045800 [exp] 324 / 8e-106 AT1G77360 192 / 4e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 204 / 1e-59 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 158 / 3e-42 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 155 / 1e-40 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 148 / 9e-39 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 130 / 2e-32 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 120 / 7e-29 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 114 / 4e-27 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083900 [exp] 112 / 3e-26 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017633 pacid=23155432 polypeptide=Lus10017633 locus=Lus10017633.g ID=Lus10017633.BGIv1.0 annot-version=v1.0 ATGGATATTACGGAAAGCCACCGCCATCATAACGGCCACATCCACCGCGACGCCGGGATACCCGTCGGAAAATGGCATGCCTCGGCTTCGCCTTCCGGTT CAATTCGTCCAATCGACCGCCCAGCTTTCCCTTCGTACACCAACATCCCCAATCTCCCCGCCAAAATCAACCACCTGTGCGAAATAATCGCCACCACTCC GTCTTCCACCGTAGAGAAAGTCCTCGCCGACTCCGACGCCGGCGGTGTCACCCAGGCGGAGGTTGAGCAAGTCCTCAAGCTGTCCTACTCCTTCCCAGCC CCTGCCGTCAAGTTCTTCCGGTGGAGCGGAATCCTTCTCAACGGCGACCACTCCGCTTACGCCTGGAACCTTGTGGTCGATCTCCTCGGTAAGAATCGCT TGTTCGACGCAATGTGGGATGCCGTCAAGTCAATGAGACGGAAAAGGTTGACCTCCCTCGCAACTTTCGCTTCCATATTCAGTAGCTATGTAATTGCCGG TAAAATAAAGGAAGCTATTATGACATTCGAGGTCATGGATCAGTACGAATGCAATCGAGATGTCGTCGCATTGAATTCTTTGCTGAGTGCTATATGTAGA GATGGTAAAACCGTCGATGCCTCTGGAATTTTTCGTGTAGCTCGGCGGCATATCATGCCTGATTCTGATTCGTATGCTATATTGTTGGAAGGGTGGGAGA AGGAGATGAATGTGGTTTGCGCTAGGGAAACTTTTAACGAAATGATCGAATGGATCGGTTGGGATCCTCGAAATGTGCCTGCTTATGATGCTTTCTTGTG CACTTTGCTTACATTTTCTGATGGTGGGGTTATGGAGGCTTTGAGATGTTTCGAGTTAATGAAGAGTAAAGGCTGTTGTCCCGGTATGAGGTTTGTAGCT TCTTTTGTTGAAAAATGCTGTAAAATTAACGATGTTAGATCCGCTGATTCGGTGTGGGAGGCGATGGTGAATGGTTTCAGGATCAGACCTGATGCAGGGT TATACAGCTTGATGATCGGTTCGCATTGCTGTTCGAGGAACACCGACAGGGCGGTACAGCTGTTCGATGAGATGGTTTGTAGAGGATTATTTCCCGATGT GCAGACGAGTAACGTGTTGTTCTGGTTATTGATTTCGAGTAGAAGGCTGAAGGAGGCGTCGGGGTTGCTGGACGAGATGGTTAGAAACAAGTGCACACCT AGCCAATCGAATTGCAGTCAGGCAGTTGAGGTGTATTTGGAATCGGGTGATGCTTATATGGCTATACTGGTTTGGAAATTGATGGTGGAGAGTTGTAAAA ATTCGGATTTGGAGGAGACTGGGAACTTGTTGATTGTACGGCTGGTTGAGCTGCAATTTGTGCCGGAAGCTGTAGTGTATGCTGAGAGTATGATTGAGAA AGGGATTAAGTTGACGCTGTCGACTATTTCGAAGTTGAAGGAGAGGCTTACCAGAGAAAGGAAGGAGATTGTGTTTGAAGAACTGCTGAAGAAGTGGACT GGCTCCTTAAAGTAG
AA sequence Show only first row Show all	>Lus10017633 pacid=23155432 polypeptide=Lus10017633 locus=Lus10017633.g ID=Lus10017633.BGIv1.0 annot-version=v1.0 MDITESHRHHNGHIHRDAGIPVGKWHASASPSGSIRPIDRPAFPSYTNIPNLPAKINHLCEIIATTPSSTVEKVLADSDAGGVTQAEVEQVLKLSYSFPA PAVKFFRWSGILLNGDHSAYAWNLVVDLLGKNRLFDAMWDAVKSMRRKRLTSLATFASIFSSYVIAGKIKEAIMTFEVMDQYECNRDVVALNSLLSAICR DGKTVDASGIFRVARRHIMPDSDSYAILLEGWEKEMNVVCARETFNEMIEWIGWDPRNVPAYDAFLCTLLTFSDGGVMEALRCFELMKSKGCCPGMRFVA SFVEKCCKINDVRSADSVWEAMVNGFRIRPDAGLYSLMIGSHCCSRNTDRAVQLFDEMVCRGLFPDVQTSNVLFWLLISSRRLKEASGLLDEMVRNKCTP SQSNCSQAVEVYLESGDAYMAILVWKLMVESCKNSDLEETGNLLIVRLVELQFVPEAVVYAESMIEKGIKLTLSTISKLKERLTRERKEIVFEELLKKWT GSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	0	1
AT1G06270			Pentatricopeptide repeat (PPR)...		Lus10017675 [exp]	1.4	0.8694
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	3.6	0.8790
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	3.9	0.8661
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	4.5	0.8640
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	6.7	0.8395
AT1G56345			Pseudouridine synthase family ...		Lus10020693 [exp]	7.3	0.8127
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	7.5	0.8549
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	8.7	0.8638
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	8.8	0.8604
AT5G60680			Protein of unknown function, D...		Lus10021474 [exp]	12.2	0.8038

Compare expression of checked genes

Lus10017633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.