Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03440 365 / 3e-124 ARM repeat superfamily protein (.1) AT4G12710 221 / 2e-68 ARM repeat superfamily protein (.1) AT5G14510 110 / 4e-27 ARM repeat superfamily protein (.1) AT2G23140 110 / 4e-26 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G23030 101 / 4e-23 PUB11 ARM repeat superfamily protein (.1) AT5G67340 99 / 4e-22 ARM repeat superfamily protein (.1) AT4G31890 95 / 4e-21 ARM repeat superfamily protein (.1.2) AT2G25130 94 / 1e-20 ARM repeat superfamily protein (.1) AT1G67530 94 / 2e-20 ARM repeat superfamily protein (.1.2) AT3G01400 91 / 3e-20 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033593 [exp] 617 / 0 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1) Lus10041090 [exp] 223 / 2e-69 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1) Lus10036415 [exp] 220 / 8e-64 AT2G04280 828 / 0.0 unknown protein Lus10002521 [exp] 123 / 1e-31 AT5G14510 281 / 1e-93 ARM repeat superfamily protein (.1) Lus10022275 [exp] 112 / 1e-27 AT5G14510 290 / 1e-96 ARM repeat superfamily protein (.1) Lus10019308 [exp] 108 / 4e-25 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 107 / 6e-25 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039047 [exp] 99 / 2e-22 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10013459 [exp] 97 / 3e-21 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G088800 [exp] 460 / 8e-162 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.017G128100 [exp] 439 / 5e-154 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.014G170100 [exp] 237 / 1e-74 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.001G344200 [exp] 127 / 2e-33 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 104 / 5e-24 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 99 / 4e-22 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.016G010800 [exp] 97 / 6e-22 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.006G263100 [exp] 97 / 1e-21 AT4G31890 545 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 93 / 3e-20 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 89 / 5e-19 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10017635 pacid=23155560 polypeptide=Lus10017635 locus=Lus10017635.g ID=Lus10017635.BGIv1.0 annot-version=v1.0 ATGGATTCCTCTTCCTCCTCCGGTGAGAATTGCTCTGTATTTTCTCCTTCATCTCCCGACTCCGAGTGCACTCCTCGTGGATCAGCTGCTTCCGCCTTCT CCCCTTCCTCTTCCTTCTCCTCCTCTCCTCCGCCTCGTTCCTCCTCCTCTTCCGGAGCCGTATACCGTGCTCTCCACCTAATCCAATCGGAAAATCTCAA CTCCAAGCTCGAGGCAGCTAAGGAAATCCGCCGTCTCACGAAAACTTCGCAGCGGTGCCGCCGGCAGCTGAGCGAAGCAGTTCCGGCGCTCGTCTCCATG CTTCGTGTTCGTGAGTACTCTGTCGACTGCTACGAGTCGGCGTTGCTCGCTCTCCTCAATCTCGCCGTGAAAGACGAACGGAACAAGAACAGCATAGTGG AAGCCGGAGCTCTAGAACCGATCATGAACTTCCTCCAATCACAAGATCTAAACTTGCAAGAGCACGCAACAGCAGCTCTTCTAACTCTTTCAGCATCCAC CCTCAACAAACCAGTCATCACTGGCTCCGGTGCAATCCCTTTGCTAGTCGAAATCCTCAAGCACGGTAGCCCTCAAGCGAAGATGGATTCCGTTATGGCT CTGTCCAATCTCTCGACACACAATCCAAACATGAATCTCGGGTCCATACTGAAAACCGATCCGATCCCACCCATAGTCAGCTTACTAAAAACCACCAAGA AATCATCACGGACGGCCGAGAAATGCTGCGCACTCATCGAGTTGCTGGTCGAATTTGAGGACGGCCGAGCTGCACTGACATCAGAGGAAGGCGGGATTCT GGCCGTGGTCGAAGTTGTGGAGAGTGGTTCGGTCCAGAGTCGAGAGCACGCCGTTGGAGCTCTGTTGAGTTTGTGTCAGAGCGATCGGTGCAAGTACAGA GAGCCAATATTGAAAGAAGGTGTGATTCCTGGACTACTTGAGCTTACGGTGCAAGGAACTCCGAAATCCCAAGTGAAGGCCAAGACATTGTTACGGCTGC TGAGGGAGAGTCCATACTCGAGGCCAGAGTTCGAGCCAGATACCCTGGAGAATATTGTTTGTAACATTATTTCGCAGATTGACGGAGATGAGCAATCCGG GAAGGCGAAGAAGATGCTGGCTGAGATGGTTCAGGTCAGCATGGAACAGAGTTTGAGACATTTGCAGCGGAGAGCTACTCTGGTATGCACACCTGCCGAT TAG
AA sequence Show only first row Show all	>Lus10017635 pacid=23155560 polypeptide=Lus10017635 locus=Lus10017635.g ID=Lus10017635.BGIv1.0 annot-version=v1.0 MDSSSSSGENCSVFSPSSPDSECTPRGSAASAFSPSSSFSSSPPPRSSSSSGAVYRALHLIQSENLNSKLEAAKEIRRLTKTSQRCRRQLSEAVPALVSM LRVREYSVDCYESALLALLNLAVKDERNKNSIVEAGALEPIMNFLQSQDLNLQEHATAALLTLSASTLNKPVITGSGAIPLLVEILKHGSPQAKMDSVMA LSNLSTHNPNMNLGSILKTDPIPPIVSLLKTTKKSSRTAEKCCALIELLVEFEDGRAALTSEEGGILAVVEVVESGSVQSREHAVGALLSLCQSDRCKYR EPILKEGVIPGLLELTVQGTPKSQVKAKTLLRLLRESPYSRPEFEPDTLENIVCNIISQIDGDEQSGKAKKMLAEMVQVSMEQSLRHLQRRATLVCTPAD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03440			ARM repeat superfamily protein...		Lus10017635 [exp]	0	1
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	4.6	0.8045
AT1G13990			unknown protein		Lus10037142 [exp]	7.6	0.7839
AT1G73760			RING/U-box superfamily protein...		Lus10013497 [exp]	7.7	0.7342
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	10.1	0.7310
AT2G20920			Protein of unknown function (D...		Lus10025079 [exp]	12.0	0.7405
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	13.7	0.7391
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	15.5	0.6953
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	26.9	0.6823
AT5G59050			unknown protein		Lus10001433 [exp]	30.7	0.7140
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	34.6	0.6899

Compare expression of checked genes

Lus10017635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.