Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 223 / 3e-67 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017637 [exp] 310 / 1e-99 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 293 / 7e-92 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10042507 [exp] 262 / 2e-81 AT3G03380 1144 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10009122 [exp] 226 / 4e-68 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10028521 [exp] 176 / 2e-50 AT3G03380 1385 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 59 / 3e-10 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128300 [exp] 225 / 9e-68 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088600 [exp] 220 / 3e-66 AT3G03380 1442 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088700 [exp] 217 / 6e-65 AT3G03380 1365 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017636 pacid=23155542 polypeptide=Lus10017636 locus=Lus10017636.g ID=Lus10017636.BGIv1.0 annot-version=v1.0 ATGATGCTTACCAATTTATGGTATAAACATCTACGGCTTTCGATTCTGGCTGGTACTGTTGCTCGCGTGGATCGAGATGCACCTTGCTGCGAAGATGATG GCTACAACAACTTTAATACGTTCTATATCCAAGCGGCATCAGGAACCAAAGGTGGTTCAAGTGGTTCTCCAGTAATTGAGAAACAAGGCAGAGCAGTTGC CTTAAATGCTGGAGGCACTGCCGGCAGTAGCGCATCTGGGTTCTTCCTGCCTCTAGAACGGGTCGTTAGAGCACTCCAGCTTTTACAGCAAGGCAAAGAT TTCGACACCGATACATGGAGTGCTGTCTGCATTCCCCGCGGTACAGTTCAGGCAACTTTTAACCACAAAGCATTCAACGAGATTCGCCGACTTGGGGTCA GGAAAGAACGAGAAGAGATGGTGCGACAAGTTTTCCCCAGTGGAATTGGAATGCTTGTTGTGCACACAGTGGTACCGGATGGTCCAGCTTCGAAACATTT GGAACCTGGGGATGTACTTGAACGCTTGAATCACGAGGTCACCACAAGCTTTTCATCCTTGGAGTCGGTTCTCGAAAGGGGCGACAAGACTCTTACCGTA CACATAACCCCCGATAGTTTTTTGGAACCGAGCAGCGCAGTTATACATTCTTTGTCGTATCAACAGGGATAA
AA sequence Show only first row Show all	>Lus10017636 pacid=23155542 polypeptide=Lus10017636 locus=Lus10017636.g ID=Lus10017636.BGIv1.0 annot-version=v1.0 MMLTNLWYKHLRLSILAGTVARVDRDAPCCEDDGYNNFNTFYIQAASGTKGGSSGSPVIEKQGRAVALNAGGTAGSSASGFFLPLERVVRALQLLQQGKD FDTDTWSAVCIPRGTVQATFNHKAFNEIRRLGVRKEREEMVRQVFPSGIGMLVVHTVVPDGPASKHLEPGDVLERLNHEVTTSFSSLESVLERGDKTLTV HITPDSFLEPSSAVIHSLSYQQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017636 [exp]	0	1
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	3.5	0.9247
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	5.3	0.8971
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	6.5	0.8971
					Lus10010383 [exp]	7.5	0.8971
					Lus10000380 [exp]	8.4	0.8971
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	9.2	0.8962
					Lus10009632 [exp]	9.9	0.8938
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	11.3	0.8789
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	13.1	0.8678
AT5G18190			Protein kinase family protein ...		Lus10043244 [exp]	13.7	0.8460

Compare expression of checked genes

Lus10017636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.