Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 585 / 0 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1) AT3G03370 47 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042507 [exp] 1320 / 0 AT3G03380 1144 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 1004 / 0 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10009122 [exp] 985 / 0 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10028521 [exp] 948 / 0 AT3G03380 1385 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017636 [exp] 325 / 4e-104 AT3G03380 226 / 3e-68 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 129 / 4e-33 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128300 [exp] 598 / 0 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088600 [exp] 591 / 0 AT3G03380 1442 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088700 [exp] 570 / 0 AT3G03380 1365 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.018G001301 [exp] 48 / 2e-05 AT5G27660 119 / 4e-30 Trypsin family protein with PDZ domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017637 pacid=23155538 polypeptide=Lus10017637 locus=Lus10017637.g ID=Lus10017637.BGIv1.0 annot-version=v1.0 ATGGCAGAAACGACGTCGTCGGTGGTGGAATTAGCGCCGCCGCCGTTTGATTCCGGCGGGAAGGGAGCGGAGGAGGAGTGGAGAGAGGTGATAAACAGAG TAGCAGCTGCGGTGGTGGTGATCCGGACCACCGTTTGCCGTGCGTTCGATACGGAGCTAAGGCGATCACCCTCCGCGACGGGGTTTGTGGTGGATAAGCG GCGGGGTATTATACTTACTAATCGTCACGTCGTCCAACCTGGCCCCATCGTCGCACAAGCTACATTTCTAAACGAAGAAGAGATTCCTATATATCCTCTT TATAGGGACCCAGTACATGATTTTGGATTCTTTCGGTATGACCCGACATCAATTCATTTTTTGAACTACGAAGAAATTCAACTCGCCCCTCAAGCTGTTT GTGTCGGCCTCGACATCAGAGTCGTTGGCAACGATAGCGGCGAGAAGCTTTCTATTATGGCCGGCACAATTGCTCGCGTCGATCGAGAAGCTCCTCGCTA TACATCTGATGGCTATAACGACTTTAATACATTCTATATCCAAGCAGCATCAGGAACAAAAGGTGGTTCAAGCGGCTCCCCTGTAATTGAGAAACAAGGC AGAGCAGTTGCCTTAAACGCTGGAGGCAAAACCACCACCAGCGCATCTGCATTCTTCCTACCTTTAGAACGGGTCGTCAGAGCTCTCGAGCTCTTACAGG AAGGCAAGGATTTCGATACCGGTACATGGAATGCTGTCTGCATTCCCCGCGGTACGCTTCAGGGGACTTTTAACTACAAAGGATTCAATGAAATTCGCCG ACTTGGGGTCAGGAAAGAACGAGAAGAGATGGTGCGAGATGTTTTCCCCAATGGAATTGGAATGCTTGTGGTGGACACAGTGGTACCAGAAGGTCCAGCT TCCAAACATTTGGAACCTGGGGACGTACTTGTACGCTTAAATCACGAGGTGACCACAAGCTTTCTATCCTTCGAGACAGTTCTTGATGACTATGTAGGGA GAGAGGTTGAACTAGAGATCGAAAGGGGCGACACGACCCTTACCGTACACATAACGGTTCAGGATTTGCACTCTATAACCCCTGACCGTTTTCTGGAACT GAGCGGTGCAATTATACATTCTTTGTCTTATCAACAGGCTAGAAGTTTCCGCTTCCCTTGCGGTCTTGTATATGTTTCATTTCCGGGGTATATTTTAGGG AGGGCGGGAGTTCCTCGCTATGCCATCATTAAGAAATTTGCAGATGTAGAGACGCCATCGATGAAGGAACTGATCGGAATGCTTCCCAAACTTTCCAGAG GAGCTCAAGTCCCATTGGTATATATAACCCACAACAATCGTCATCAGATTAAGCATGCCTTGGTGACAGTGGATCTCCATGAATGGTACGGAGCTCCACA GATTTACACTCGTAACGATTCTACTGGTCTCTGGAACATACTTCCTGCTGCTCTACCAACTGACCAACTTCAAGTAGTAGACGATCCTACAATTCTGCCA AGCAACGGTGAAAAAGATGATGGTGTAGATAGCAGAACCACTGAAATGAATGCCAAGTCCTTTTCGGCAAGGACGGTGATAGAACCGTCGCTCGTTATGT GCAAGGTGAGCATACCTCCACTATGTATGATCGATGGAGCCAATTCCAAGTACTACACCGGGACCGGTATCGTCGTCCATCAGTCGGATTCGTTCGGATT GGTTGTTGTTGACAGAAACACCGTTCCAATGTCTGCTTGCGAAATACTGCTCTATTTCGCAGCGATTCCTGTTCAGATTCCAGGCCAGGTTGTGTTTCTA CATCCAGTTTATAATTATGCTATTGTAGCATACAATCCATCAGCATTAGGTGTTGATGGTAAATCCGCAGTTCGCCCAGCAGAATTACTTCCCGCTCCGT TACTGAATCACGAGGACTCGGTGTATCTTGTTGGCCTAAATAAAAACTTAGGTGCAATTTGTAAGAAATGTATTGTTACCAACCCAATTGGTCCCATAAT GGCCAAATCAGGCACATATCCACATTATAAAGCAACCAATATGGAAGTCATTGAGCTCGATTCAGATTTAGGCAAGTCTTTTGATGGTGTGCTATGCAAC GAGACGGGACTGGTTCAAGCTCTATGGGGAAGCTTTCACACCCAGCTGAAATCTGGATATTCGGCGAAAAATCAAATTGTTAGGGGGATCCCAATTTACA TGGTTAGCCAAGTAGTTGAACAGATTGTGCATGGCTCAGATGCTGGACCGACGACTCTTCTCATCAATGGAGTCAAAAGAGCAATGCCACTCGTTCGACT TCTGGAAGTGGAACTCGTCCCGATATCACTTTCCAAAGCCCGCACCTTTGGCCTGACTGATTGTTGGATCAAAGCCCTGTTAAAGAAGGATCCGGTGAGG AAACAAGTTTTACGAGTAAAAGGGTGCTGGGCCGGATCGAAGGCTGCAAGTCAATTGAGTGAAGGAGACATGTTACTGGCAATCGATGGGAAACCAGTTA CATGCTTTTCCGACATCGAAAATGCTTGTCAAGCACTCGACAATCATGGCCAAGATGAAACCACCGACGGGAAGCTTCCCTTTATAATCTTACGACAGGG ACGTGAAGTTAATATGGACGTTGAAACAGACATTAGAGACGGAAATGGGACACAGCGAGTGATTAATTGGAGCGGGTTTATTATTCAAGAAACTTACTCA GCAGTCCGTGCTCGTGGATATCTACCCGAAAATGGTCATGGTGTCTACATAACTTCGAGCCTTGCCGGAACCCCTGCAGAAAGATACAATGTGTGGACCG ATCAATGGGTCGTAGAAGTCAACGGCAATAAAACACCAACTCTTGATATTTTTCTAGATGTGGTCAAAGGACTAGAGGATGACGAGTTTATCAGAATGAA GACAATCAACTTGGAAGGAAAGCCCCAAATCTTAACCTTAAAACAAGATTTAATTTACTGGCCGACGGAGGAGCTGAGGTTCGATCAACGCACCGCAACT TGGAAAAGGCAGACACTTAGTGCACTTGTTTAA
AA sequence Show only first row Show all	>Lus10017637 pacid=23155538 polypeptide=Lus10017637 locus=Lus10017637.g ID=Lus10017637.BGIv1.0 annot-version=v1.0 MAETTSSVVELAPPPFDSGGKGAEEEWREVINRVAAAVVVIRTTVCRAFDTELRRSPSATGFVVDKRRGIILTNRHVVQPGPIVAQATFLNEEEIPIYPL YRDPVHDFGFFRYDPTSIHFLNYEEIQLAPQAVCVGLDIRVVGNDSGEKLSIMAGTIARVDREAPRYTSDGYNDFNTFYIQAASGTKGGSSGSPVIEKQG RAVALNAGGKTTTSASAFFLPLERVVRALELLQEGKDFDTGTWNAVCIPRGTLQGTFNYKGFNEIRRLGVRKEREEMVRDVFPNGIGMLVVDTVVPEGPA SKHLEPGDVLVRLNHEVTTSFLSFETVLDDYVGREVELEIERGDTTLTVHITVQDLHSITPDRFLELSGAIIHSLSYQQARSFRFPCGLVYVSFPGYILG RAGVPRYAIIKKFADVETPSMKELIGMLPKLSRGAQVPLVYITHNNRHQIKHALVTVDLHEWYGAPQIYTRNDSTGLWNILPAALPTDQLQVVDDPTILP SNGEKDDGVDSRTTEMNAKSFSARTVIEPSLVMCKVSIPPLCMIDGANSKYYTGTGIVVHQSDSFGLVVVDRNTVPMSACEILLYFAAIPVQIPGQVVFL HPVYNYAIVAYNPSALGVDGKSAVRPAELLPAPLLNHEDSVYLVGLNKNLGAICKKCIVTNPIGPIMAKSGTYPHYKATNMEVIELDSDLGKSFDGVLCN ETGLVQALWGSFHTQLKSGYSAKNQIVRGIPIYMVSQVVEQIVHGSDAGPTTLLINGVKRAMPLVRLLEVELVPISLSKARTFGLTDCWIKALLKKDPVR KQVLRVKGCWAGSKAASQLSEGDMLLAIDGKPVTCFSDIENACQALDNHGQDETTDGKLPFIILRQGREVNMDVETDIRDGNGTQRVINWSGFIIQETYS AVRARGYLPENGHGVYITSSLAGTPAERYNVWTDQWVVEVNGNKTPTLDIFLDVVKGLEDDEFIRMKTINLEGKPQILTLKQDLIYWPTEELRFDQRTAT WKRQTLSALV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10017637 [exp]	0	1
AT3G57790			Pectin lyase-like superfamily ...		Lus10026318 [exp]	3.0	0.8159
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	5.5	0.7471
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	11.0	0.8134
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10032022 [exp]	14.1	0.7939
AT4G35750			SEC14 cytosolic factor family ...		Lus10005640 [exp]	14.1	0.7879
AT3G46850			Subtilase family protein (.1)		Lus10016482 [exp]	18.8	0.7380
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	29.3	0.8105
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	33.9	0.7496
AT3G56460			GroES-like zinc-binding alcoho...		Lus10028988 [exp]	35.9	0.7880
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014002 [exp]	41.9	0.6741

Compare expression of checked genes

Lus10017637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.