Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43040 921 / 0 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28600 494 / 5e-166 NPGR2 no pollen germination related 2 (.1) AT1G27460 433 / 5e-143 NPGR1 no pollen germination related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033595 [exp] 1309 / 0 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10020725 [exp] 1085 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029803 [exp] 1073 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10023748 [exp] 543 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 542 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 485 / 1e-162 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 477 / 2e-159 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 471 / 5e-157 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 459 / 1e-152 AT4G28600 726 / 0.0 no pollen germination related 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055200 [exp] 968 / 0 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.008G169500 [exp] 536 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.002G259300 [exp] 522 / 7e-177 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 507 / 4e-171 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.014G016000 [exp] 473 / 5e-158 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 466 / 9e-156 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017638 pacid=23155501 polypeptide=Lus10017638 locus=Lus10017638.g ID=Lus10017638.BGIv1.0 annot-version=v1.0 ATGGTAGGGAGCCAATCTGCAGAATCCAATGGGAACGAGGACCAGATACTGATCCGCGAGTTCTGCGCAAATGGAGCTTGCATGAAAGCAGATGAGTTAG AAGCTAAGCTTGATGATGGAAATATACAGGAGGCCGAGTCTTCTCTACGGGAGGGGTTGTCCCTCAACCTCGAGGAAGCAAGAGCCCTTCTTGGGAGGAT GGAATATCAGCGTGGGAATGTCGAAGGTGCTCTTCGTGTTTTCGAAGGCATTGATCTCCAGGCTGCGTCAGCGAGATTGCAGTCATCCATTGCTGACAAA AATGCTCGCAAAACTTCCCAATCAGGTGGATCACAACATGCTGCTAGCCTGGTGCTTGAAGCAATATACTTAAAAGCCAAGTCTTTACAAAAGCTTGGAC GATCATACGACGCTGCTAAAGAGTGTAAAAGTGTGCTTGATGCAGTGGAGAACATATTCCAGCAGGGCATATCTGATGTACAAGTAGACAGTAGATTGCA AGACACAGTTAGTCAAGCAGTGGAGTTACTTCCAGAGCTTTGGAAGCAGGCTGGTTATTTTCCTGAAGCAATAGCTGCTTATAGAAGAGCTCTTCTAAGC TCATGGAATCTTGGGAATGACTGTTGTGCAAGGATCCAGAAAGCATTTGCAGTGTTTTTGTTGCATAGTGGAGTGGAGACTTCACCTCCCAGTTTAGCAT CTCAACCTGACGGTTCCTATGTACCTAAGCATAACCTGGAAGAGGCCATTTTGCTTTTGCTCATTCTAGTCAGGAAGTTTAGCCTTGGTAAGACGACATG GGACCCTTCAGTTCTGGAGCATCTCAGCTTTGCATTATCCATATGTAGTCAAACTTGTGTTTTAGGGAAGGAACTTGAAGTGACCATGCCCGGTGTGATC CATCGCGCTGATCGTTGGAAAAGTTTAGCTCTTTGTTACAGTGGAGGAGGACAAAACCAAGCTGCTCTAAACCTACTGAGGAAGTCTCTTCACAGACACG AAAGACCTGATGATCTGATATCTCTGCTACTGGCTTCCAAAATCTGCACTGAGGATTCTAATCTTGCTGCAGAAGGAGTGGGGTATGCGCAAAGAGCCTT TGTTAAGGCAAAGGCTACTGATGAGCACATGATTGGTGTGGCTGTCCATATGATGGGTCTTTGCTTGGCAAAACAATCAAAAATTTCTTCCTCCGATTTC GAAAGGTCGCGCCTGATGTCTGAAGCCTTGAAATCTTTGGAGGCTGCATTTGCCTTGCAGCCCAACAATATAGATTTAATATTCGATCTAGGTGTTCACT ATGCAGAGCAACGGAATCTCTGTGTTGCTCTGCGTTATGCCAAGCAATATCTCGATGCAACTGGTGGCTCCATGTTAAAAGGTTGGAGGTTTCTTGCTCT GGTCTTATCTGCCCAGCAGCAATTCCCGGAGGCTGCAGTTGTTACTGATGCTGCTCTGGACGAGACTGCAAAATGGGAGCAAGGACCATTGCTCAGGTTG AAAGCTAAACTCAAGGGTGCACAGTCTCTACCTTCAGAAGCTGTCGAAACTTACCGTTATCTGCTTGCTTTGATCCAAGCTCAAAGGAAGTCCTTTGGTC CCGTCATTACTGTCTCACAGGCTGAGAATGACAAGGTCAATGAATACGAAGTTTGGCATGGTCTGGCTGATCTATATTCCAGACTTTCTCAGTGGGAGGA TGCTGAGGTATGTATGATGCTTGAAGCCCGTGGAGAATTACGAGACGCTCTATGCTCTTATGTCTGTGGCCATTTGACGGAGCCATCGTATGTTCCTGTG ATTATATTGGGTGCCTCCTTGTTATCCAAGACTGGTTCGGAATCATCATTACCGATAGCAAGAAGCATACTCTCTGATGCTTTGAGGGTTGAGCCAACCA ACAGGAAAGCTTGGTATTACTTAGGCATTGTCCACAGGGACGATGGACGTACTGCTGATGCTGCTGACTGCTTCCAAGCTGCTTCCATCCTCGAGGATAC TGATCCAATCGAAAGTTTCGGATCTGTCTGTTGA
AA sequence Show only first row Show all	>Lus10017638 pacid=23155501 polypeptide=Lus10017638 locus=Lus10017638.g ID=Lus10017638.BGIv1.0 annot-version=v1.0 MVGSQSAESNGNEDQILIREFCANGACMKADELEAKLDDGNIQEAESSLREGLSLNLEEARALLGRMEYQRGNVEGALRVFEGIDLQAASARLQSSIADK NARKTSQSGGSQHAASLVLEAIYLKAKSLQKLGRSYDAAKECKSVLDAVENIFQQGISDVQVDSRLQDTVSQAVELLPELWKQAGYFPEAIAAYRRALLS SWNLGNDCCARIQKAFAVFLLHSGVETSPPSLASQPDGSYVPKHNLEEAILLLLILVRKFSLGKTTWDPSVLEHLSFALSICSQTCVLGKELEVTMPGVI HRADRWKSLALCYSGGGQNQAALNLLRKSLHRHERPDDLISLLLASKICTEDSNLAAEGVGYAQRAFVKAKATDEHMIGVAVHMMGLCLAKQSKISSSDF ERSRLMSEALKSLEAAFALQPNNIDLIFDLGVHYAEQRNLCVALRYAKQYLDATGGSMLKGWRFLALVLSAQQQFPEAAVVTDAALDETAKWEQGPLLRL KAKLKGAQSLPSEAVETYRYLLALIQAQRKSFGPVITVSQAENDKVNEYEVWHGLADLYSRLSQWEDAEVCMMLEARGELRDALCSYVCGHLTEPSYVPV IILGASLLSKTGSESSLPIARSILSDALRVEPTNRKAWYYLGIVHRDDGRTADAADCFQAASILEDTDPIESFGSVC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10017638 [exp]	0	1
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	2.6	0.7378
AT3G10405			unknown protein		Lus10038692 [exp]	7.7	0.7196
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10021539 [exp]	11.9	0.7265
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	15.6	0.6636
AT5G54860			Major facilitator superfamily ...		Lus10017090 [exp]	21.8	0.6764
AT1G03260			SNARE associated Golgi protein...		Lus10012371 [exp]	29.1	0.6876
AT2G34930			disease resistance family prot...		Lus10016340 [exp]	38.4	0.5431
AT4G35640		ATSERAT3;2	serine acetyltransferase 3;2 (...		Lus10007424 [exp]	95.1	0.6091
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10034139 [exp]	101.1	0.6190
AT2G14110			Haloacid dehalogenase-like hyd...		Lus10020444 [exp]	154.1	0.5977

Compare expression of checked genes

Lus10017638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.