Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59030 701 / 0 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) AT3G21690 428 / 8e-146 MATE efflux family protein (.1) AT1G61890 406 / 2e-137 MATE efflux family protein (.1) AT1G11670 393 / 3e-132 MATE efflux family protein (.1) AT4G21910 380 / 4e-127 MATE efflux family protein (.1.2.3.4) AT5G38030 371 / 7e-124 MATE efflux family protein (.1) AT1G12950 372 / 9e-124 RSH2 root hair specific 2 (.1) AT4G21903 367 / 7e-122 MATE efflux family protein (.1.2) AT3G26590 360 / 2e-119 MATE efflux family protein (.1) AT1G47530 350 / 6e-116 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033596 [exp] 894 / 0 AT3G59030 759 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10027169 [exp] 414 / 4e-140 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10002067 [exp] 399 / 3e-134 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 396 / 3e-133 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 388 / 2e-130 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 371 / 1e-123 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 366 / 5e-122 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 362 / 3e-120 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 362 / 7e-120 AT3G26590 666 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055100 [exp] 687 / 0 AT3G59030 719 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Potri.005G207600 [exp] 686 / 0 AT3G59030 692 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Potri.005G207500 [exp] 686 / 0 AT3G59030 690 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Potri.011G002800 [exp] 422 / 7e-144 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 422 / 1e-143 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 417 / 9e-142 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 414 / 1e-140 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 412 / 1e-139 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 409 / 3e-138 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 408 / 6e-138 AT3G21690 636 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10017639 pacid=23155445 polypeptide=Lus10017639 locus=Lus10017639.g ID=Lus10017639.BGIv1.0 annot-version=v1.0 ATGGCATCATCGGCCACCGAATACTCTCCCCTGCTCTCGAGCCTGCACAGCTCAAACTCCTCTGGTTTTACTCAACTGTCCTCTGATGCCATTGAGGAGC TGCTGGAGCAGAGGCAGGTTACTACCTCGAGGACCTTCCGGTGGTGGGTCCAGATGTTTGCTTGGGAGTCACGGCAGCTCTGGCTGCTATCGTGGGCGGC TATCGTAGTGTCAGTTTTCAACTATATGATCAGCTTTGTGACCCTCATGTTCATTGGCCATTTGGGTTCCTTGGAGCTTGCTGGTGCCTCCATTGCTACT GTTGGAATTCAAGGCCTTGCCTATGGCATCATGCTTGGGATGGCAAGTGCAGTGCAGACAGTATGTGGGCAAGCGTACGGAGCCAAACGGTACTCAGCAA TGGGGATCATCTGCCAAAGGGCAGTCCTCCTTCATCTCATAGCAGCAACCTTCCTCTCCTTCCTCTACGTCTTCTCCGGCCCAGTGCTCCTCTCCATAGG CCAATCGGCCGCCATATCGAAGCAAGGCCAAGTCTTCGCCAGGGGGCTCATCCCGCAGCTCTATGCATTCGCAGTGAGCTGCCCACTCCAGAGGTTCCTC CAAGCACAGAACATCGTGAACCCGTTAGCATACATGGCGGTCGGAGTGTTTTTCTTGCACACATTGCTCACTTGGCTAGCCGTTGAGGTCTTGGAGCTAG GCATCCTTGGTGCGGCATTGACCCTGAGCTTTTCGTGGTGGGTTTTGGTTGCGTTGAATGCTGGCTACATTTTCTGGAGCCCTAGTTGTAAGGAGACTTG GACCGGGTTCTCGAGTGTTGCTCTTAGAGGGATTTGGCCTTACTTCAAGCTCACTCTTGCTTCAGCTGTCATGCTTTGCTTGGAAGTATGGTACAACCAA GGGTTGGTTCTTATATCAGGTCTTCTATCCAATCCAACCATTGCCTTGGATTCCATCTCTATTTGCATGTACTACTTGAACTGGGACATACAGTTCATGT TGGGGCTCAGTGCAGCTGCAAGCATTCGGGTGAGCAACGAGCTAGGAGCAGGGCATCCGAACGTGGCGAAGCTGTCGGTAGGGGTGGTGAACGGTAGCAG CATCGCGATCAGCTCGGTGTTCAGTGCTGCAGTGTTGATATGCAGAGTAGGGTTGAGCAAGTTGTTCACTAGTGACTCGGAGGTTATGGAGGCGGTCTCG GACCTAACTCCTTTACTAGCCATCTCTGTTTTCCTCAATGGCATTCAACCCATCCTTTCTGGAGTGGCGATCGGGAGCGGATGGCAAGGAGTGGTGGCAT ATGTGAACTTGGCAACTTACTACATCATCGGGCTTCCGGTTGGATGTGTTCTTGGCTTCAAAACCTCGTTGGGAGTTGCGGGAATATGGTGGGGAATGAT AGTAGGAGTTGTTTTGCAGACAGTGACACTGATTGTCATCACTGCAAGAACCAACTGGGATGCAGAGGTGGGAAAAGCGGTCGAAAGGCTGAAAAACTCG GCGAATGAGAATTTGGACTTGGTGGAAATTTAA
AA sequence Show only first row Show all	>Lus10017639 pacid=23155445 polypeptide=Lus10017639 locus=Lus10017639.g ID=Lus10017639.BGIv1.0 annot-version=v1.0 MASSATEYSPLLSSLHSSNSSGFTQLSSDAIEELLEQRQVTTSRTFRWWVQMFAWESRQLWLLSWAAIVVSVFNYMISFVTLMFIGHLGSLELAGASIAT VGIQGLAYGIMLGMASAVQTVCGQAYGAKRYSAMGIICQRAVLLHLIAATFLSFLYVFSGPVLLSIGQSAAISKQGQVFARGLIPQLYAFAVSCPLQRFL QAQNIVNPLAYMAVGVFFLHTLLTWLAVEVLELGILGAALTLSFSWWVLVALNAGYIFWSPSCKETWTGFSSVALRGIWPYFKLTLASAVMLCLEVWYNQ GLVLISGLLSNPTIALDSISICMYYLNWDIQFMLGLSAAASIRVSNELGAGHPNVAKLSVGVVNGSSIAISSVFSAAVLICRVGLSKLFTSDSEVMEAVS DLTPLLAISVFLNGIQPILSGVAIGSGWQGVVAYVNLATYYIIGLPVGCVLGFKTSLGVAGIWWGMIVGVVLQTVTLIVITARTNWDAEVGKAVERLKNS ANENLDLVEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10017639 [exp]	0	1
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	3.3	0.7004
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10011983 [exp]	19.3	0.6855
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	21.6	0.6726
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	30.3	0.6595
					Lus10011453 [exp]	36.2	0.6521
AT5G10840			Endomembrane protein 70 protei...		Lus10010683 [exp]	37.8	0.5712
AT5G15430			Plant calmodulin-binding prote...		Lus10021647 [exp]	41.1	0.6238
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	50.6	0.5992
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035123 [exp]	51.1	0.6166
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	91.4	0.5569

Compare expression of checked genes

Lus10017639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.