Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30540 489 / 1e-174 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033600 [exp] 722 / 0 AT1G30540 491 / 3e-175 Actin-like ATPase superfamily protein (.1) Lus10023262 [exp] 490 / 2e-174 AT1G30540 495 / 9e-177 Actin-like ATPase superfamily protein (.1) Lus10038542 [exp] 487 / 2e-173 AT1G30540 493 / 5e-176 Actin-like ATPase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143500 [exp] 596 / 0 AT1G30540 473 / 2e-168 Actin-like ATPase superfamily protein (.1) Potri.011G164500 [exp] 520 / 0 AT1G30540 523 / 0.0 Actin-like ATPase superfamily protein (.1) Potri.001G466900 [exp] 520 / 0 AT1G30540 518 / 0.0 Actin-like ATPase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01869 [flax] [poplar] BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family
Representative CDS sequence Show only first row Show all	>Lus10017642 pacid=23155434 polypeptide=Lus10017642 locus=Lus10017642.g ID=Lus10017642.BGIv1.0 annot-version=v1.0 ATGAAGAGGTACAGGAATGGAGAAATCTGGGACTTCGAGTACGAGAACGGGCTGGCGAGTAATCGTCCGGTGATCTTAGGATTGGACGGCGGCACAACTT CGACCGTTTGTGTTTGCATCCCGATTCTCCCGTTCTCCGCTCCGTTGCCTGATCCTCTTCCGTTTCTGGCTCGCGCTGTCGCCGGATGCTCCAATCACAA CAGCGTTGGCGAACTTGCTGCTAGAGAGACATTGGAGCGAGTTATGGCAGAGGCACTCTTGAAGTCTGCTTCAAATAGATCAGCAGTAAGAGCAGTTTGT TTAGCTGTTTCAGGTGTTAATCATCAAACAGATGAGCGGCGAATCATGAAGTGGCTCAGGGACATCTTCCCTCGTCATGTAGAGCTATTTGTTCAGAATG ATGCTGTGGCAGCTTTAGCTAGTGGAACAATGGGAAAGCTTCATGGATGTGTTTTAATTGCTGGAACAGGAACAATCGCGTATGGGTTCACAGAAGATGG CCGGACAGCTCGCGCTGCAGGTGCTGGCCCTGTCCTCGGTGACTGGGGAAGTGGCTATGGAATAGCTGCACAGGCATTAACGGCAGTAATAAGGGCGTAC GATGGTCGAGGTCCTGAAACGATTCTTACATCTAGTATCTTGCAGTTTCTTGGACTTTCTTCTCCTGATGAACTTATAGGGTGGACTTATTTAGATCCAT CATGGGCTCGCATTGCGAATCTTGTCCCGGTGGTCGTATCTTGTGCAGAGGCTGGTGATGAAGTTGCGAATCAGATACTGCAAGATTCAGTCGAAGAGTT GGCTCTAAGCGTGAAAGCTGTTGTGCATCGACTTCAATTGTGTGGCGAAAATGGGAATGCTCCTTTTCCTCTTGTGATGGTCGGTGGTGTTCTTGAAGCA AACAAGAAATGGGATATAGGGAAAGAGGTTGTGAATTGCATTTCACGAGATTACCCTGGAGCTCATCCTATTGTTCCAAAGCTAGAGCCGGCCGTGGGAG CAGCATTACTAGCATGGAATTTCTTGATGAAACAGTCTCGCAACGAGAAGACCACAGACCGCCATTGTCATCACTGA
AA sequence Show only first row Show all	>Lus10017642 pacid=23155434 polypeptide=Lus10017642 locus=Lus10017642.g ID=Lus10017642.BGIv1.0 annot-version=v1.0 MKRYRNGEIWDFEYENGLASNRPVILGLDGGTTSTVCVCIPILPFSAPLPDPLPFLARAVAGCSNHNSVGELAARETLERVMAEALLKSASNRSAVRAVC LAVSGVNHQTDERRIMKWLRDIFPRHVELFVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRTARAAGAGPVLGDWGSGYGIAAQALTAVIRAY DGRGPETILTSSILQFLGLSSPDELIGWTYLDPSWARIANLVPVVVSCAEAGDEVANQILQDSVEELALSVKAVVHRLQLCGENGNAPFPLVMVGGVLEA NKKWDIGKEVVNCISRDYPGAHPIVPKLEPAVGAALLAWNFLMKQSRNEKTTDRHCHH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30540			Actin-like ATPase superfamily ...		Lus10017642 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	3.5	0.8820
AT1G12140		FMOGS-OX5 ,FMO ...	flavin-monooxygenase glucosino...		Lus10032247 [exp]	8.7	0.8637
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	9.7	0.8965
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	9.9	0.8727
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	18.0	0.8818
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	21.5	0.8775
AT2G38170		RCI4, ATCAX1, C...	RARE COLD INDUCIBLE 4, cation ...		Lus10040674 [exp]	22.4	0.8785
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	25.1	0.8275
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	27.9	0.8782
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	27.9	0.8786

Compare expression of checked genes

Lus10017642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.