Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30990 149 / 6e-38 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) AT1G29240 75 / 1e-13 Protein of unknown function (DUF688) (.1) AT5G45850 47 / 6e-05 Protein of unknown function (DUF688) (.1) AT2G34170 46 / 9e-05 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033602 [exp] 709 / 0 AT2G30990 169 / 5e-45 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029830 [exp] 216 / 5e-62 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10020709 [exp] 186 / 1e-51 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029223 [exp] 96 / 4e-20 AT1G29240 168 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10007276 [exp] 92 / 5e-19 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10025403 [exp] 54 / 5e-07 AT4G18630 167 / 9e-45 Protein of unknown function (DUF688) (.1) Lus10015280 [exp] 49 / 1e-05 AT5G45850 170 / 2e-45 Protein of unknown function (DUF688) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142800 [exp] 188 / 2e-50 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Potri.011G067000 [exp] 109 / 1e-24 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.004G057800 [exp] 101 / 7e-22 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10017644 pacid=23155570 polypeptide=Lus10017644 locus=Lus10017644.g ID=Lus10017644.BGIv1.0 annot-version=v1.0 ATGGAAGAGAAGCAACTGGATCTCAGTCAGCCATTTTTATCAGTGAGGAGGGCTGCTTCATCAACACCAGCAGTTGTTGCAAAAGAATCAGAGAAGAAAA AACCTGCAACTGGTTCGACCAAGCCTCTGCTGCCACCTCTTCCTCATTACAAACCAGATTTGAAATCAGGACCTATCAGGGTTCCAGGAACAGTCCCCTT CCTCTGGGAGAGAAGCCCCGGAAGACCAAAGAATAACGAAACCGTCACCTCTGATCACAAAGCTCATCTTCCTCCTGTTGTTCCAAGGCTTCCTCCTGGA AAAAGGGCATTAATGTTGAATGCTCACTCAGATGCTGCTAGCTCTGAAGAAGGATCATCATCACCAGCAGCTGGATTCTCCGATTATCGGGAAGGAGTAA TGGAGGAGACAAGGAGTGAGGATTATGATGATAATGATGATGACGACGAGTATGAGAGGTTTGTGGATGCACTTGACACACTATCCAGGACGGAATCTTC ATTGCTGAACTGCAGCGTTACAGGGATCACCGGGCTGGATGCTGTGGATATGAGACTGAATCGAACACTCTCGAGCGAATTTCATGCTAAGGAGTTCATG ATTGGTAGATTCTTACCTGCTGCGCAAGCAATGGCGAACGGAAGTCCTCAGTATTCTCCACAGTATCCTACCAAGAAGCAGCCCGTTCTACGAGAGCAAA CGAGGCAGATTATGACACTCAACCAGCCTCCTCCTCTGAAACCTTCGAGGAGAGATCACATTGTACCGTACTATGCACAATGTGATACTAATTCGGTGGA CGGGGATGATGATGATTACAGCGAACCGGACACTTCTTCGCTAGGTGTTTGTGGTTTCTTCCCTAGTTTCTGCTTGCAGAATCGATTGAATCCCGTTCCG GGGATTAGAACTCCGGCTTCTTCTTTCAGGACCAGACGAGATAAGTATGATAAGGCTGCTGAACATGGGAGAAGAGTAATGAATGAACCACCTCGACGAC AATCAGGAAATCGTATCGATGATTCTCAGACACGGTCCCAGCCGGCTGATCCGAGTAATAATGCTGGATGGTCTCATAATTATGAATCTTCTCAACCTAA TGCCTTCAAAGCTAAAGGCTTTCTTGGAGTTCCTGCAGAAAGGCATAATAATAAAGGTTTGGAGACAATGGGATCTATTCTGGCTGTTAAGGAAGTCATC AGTTTCGCCGAATTATTAGCACACGACGATCTAGAATGGGAATCGAGGAAGAAAACACTGCACATCGATTCGAAGTATGATAAGGCTGCTGAACATGGGA GAAGAGTAATGAATGAACCACCTCGACAACAATCCGGAAATTGTATCAATGATTCTCAGACACGGTCCCAGCCGGCTGATCCGAGTAATAATGCAGGATG GTCACATAATTACCAATCTTGTCAACCTGATGTTTTTATAGCTCAAGGCTTTCTTGGAGTTCCTGCAGAAAGGCATAATAATAAAGGTTTGGAGACAATG GGATCTATTCTGGCTGTTAAGGAAGTCATCAGTTTCGCCGAATTATTAGCACACGACGATCAAGAATGGGAATCGAGGAAGAAAACACTGCACATCGATC CAATCGCAAGCAAGCCTGAAGAAAAGAGCACTGATGGTGTCGCAAAGTCTGCATCTTTGATTGCTTGTGATCGCCCATCTCTAGACAATGTATCTCGAGC TGATGTTTGTCGCGATAAGAACCTTATGCTTGCTGCTCCTGCAACATCGGTGAAGATTCCACCAGCTGATGAAGTTCGTAAGGAACAAGACGATTCTTCT CGAGGATCAGTCAAGGACTCTACAGACTTCACAAGGCGAAAACTCAGTACTGGTCGTGGTGGTGGTGACAGTAACACAAGGCCAAGTCAAAGGAAACCTT GCCCTCTTCCTTTACCATTACCGAAGTCTCCATCGGAGTCGTGGCTGAAGAAAGCTCTGCCTACCGTTTCGTCAAGAACTCAGATGTCGAAATCTCCGCT TGGCATGATTCTCATGCATCATCATCCAAAAGAAGTTGAAGGTCACAACACAGATCCAACATGGGAAACTATAGTGAAGAGTTCCTGTGAGAAGAACAGG AGGTTTCAGTTCTCTGAGGGCCAACTTACACCAATACCAGAAGCCTAA
AA sequence Show only first row Show all	>Lus10017644 pacid=23155570 polypeptide=Lus10017644 locus=Lus10017644.g ID=Lus10017644.BGIv1.0 annot-version=v1.0 MEEKQLDLSQPFLSVRRAASSTPAVVAKESEKKKPATGSTKPLLPPLPHYKPDLKSGPIRVPGTVPFLWERSPGRPKNNETVTSDHKAHLPPVVPRLPPG KRALMLNAHSDAASSEEGSSSPAAGFSDYREGVMEETRSEDYDDNDDDDEYERFVDALDTLSRTESSLLNCSVTGITGLDAVDMRLNRTLSSEFHAKEFM IGRFLPAAQAMANGSPQYSPQYPTKKQPVLREQTRQIMTLNQPPPLKPSRRDHIVPYYAQCDTNSVDGDDDDYSEPDTSSLGVCGFFPSFCLQNRLNPVP GIRTPASSFRTRRDKYDKAAEHGRRVMNEPPRRQSGNRIDDSQTRSQPADPSNNAGWSHNYESSQPNAFKAKGFLGVPAERHNNKGLETMGSILAVKEVI SFAELLAHDDLEWESRKKTLHIDSKYDKAAEHGRRVMNEPPRQQSGNCINDSQTRSQPADPSNNAGWSHNYQSCQPDVFIAQGFLGVPAERHNNKGLETM GSILAVKEVISFAELLAHDDQEWESRKKTLHIDPIASKPEEKSTDGVAKSASLIACDRPSLDNVSRADVCRDKNLMLAAPATSVKIPPADEVRKEQDDSS RGSVKDSTDFTRRKLSTGRGGGDSNTRPSQRKPCPLPLPLPKSPSESWLKKALPTVSSRTQMSKSPLGMILMHHHPKEVEGHNTDPTWETIVKSSCEKNR RFQFSEGQLTPIPEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	0	1
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015744 [exp]	3.3	0.8660
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021876 [exp]	3.7	0.8647
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	4.9	0.8794
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	4.9	0.8962
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	6.3	0.9107
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	6.3	0.8549
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10031382 [exp]	6.7	0.8941
AT5G47740			Adenine nucleotide alpha hydro...		Lus10002238 [exp]	8.0	0.8621
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	8.7	0.8505
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	8.8	0.8729

Compare expression of checked genes

Lus10017644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.