Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58670 391 / 1e-139 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) AT2G42670 379 / 5e-135 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) AT5G15120 219 / 5e-71 Protein of unknown function (DUF1637) (.1) AT5G39890 200 / 6e-64 Protein of unknown function (DUF1637) (.1) AT1G18490 193 / 5e-61 Protein of unknown function (DUF1637) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033603 [exp] 483 / 9e-176 AT3G58670 385 / 3e-137 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10020711 [exp] 458 / 4e-166 AT3G58670 386 / 8e-138 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10029828 [exp] 386 / 1e-134 AT3G58670 322 / 4e-109 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10015360 [exp] 207 / 5e-66 AT5G39890 316 / 6e-108 Protein of unknown function (DUF1637) (.1) Lus10027254 [exp] 205 / 2e-65 AT1G18490 324 / 1e-111 Protein of unknown function (DUF1637) (.1) Lus10038962 [exp] 197 / 2e-62 AT1G18490 332 / 1e-114 Protein of unknown function (DUF1637) (.1) Lus10013620 [exp] 167 / 7e-51 AT5G39890 225 / 7e-73 Protein of unknown function (DUF1637) (.1) Lus10003861 [exp] 165 / 1e-49 AT5G39890 229 / 4e-74 Protein of unknown function (DUF1637) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058000 [exp] 349 / 6e-123 AT3G58670 320 / 1e-111 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Potri.011G067300 [exp] 343 / 2e-120 AT2G42670 316 / 8e-110 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) Potri.004G129400 [exp] 216 / 4e-70 AT5G39890 338 / 1e-117 Protein of unknown function (DUF1637) (.1) Potri.015G055600 [exp] 205 / 1e-65 AT1G18490 341 / 2e-118 Protein of unknown function (DUF1637) (.1) Potri.017G079400 [exp] 199 / 7e-64 AT5G39890 300 / 4e-103 Protein of unknown function (DUF1637) (.1) Potri.012G057400 [exp] 198 / 3e-63 AT1G18490 329 / 3e-114 Protein of unknown function (DUF1637) (.1) Potri.013G064200 [exp] 190 / 7e-60 AT5G15120 238 / 4e-78 Protein of unknown function (DUF1637) (.1) Potri.019G038851 [exp] 189 / 1e-59 AT5G39890 225 / 6e-73 Protein of unknown function (DUF1637) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF07847 [flax] [poplar] PCO_ADO PCO_ADO
Representative CDS sequence Show only first row Show all	>Lus10017645 pacid=23155492 polypeptide=Lus10017645 locus=Lus10017645.g ID=Lus10017645.BGIv1.0 annot-version=v1.0 ATGCCTTACTATATACAAAGGCTGTATAATACTTGCAAGTCGTCTTTGTCAACCAATGGCCCTGTTTCGGAAGAAGCGCTTGAAAAGGTTCGCAATATGT TAGAGAAAATCAAACCTTCTGACATAGGTCTTGAGCAGGAGGCACAATTGGTACGCAATTGGTCAGGTCCTGTGCAAGAACGAAATGGTCGCCGTCAAAC TTTACCACCTATCAAATACCTCCACCTGCATGAGTGTGACAGCTTCTCTATTGGCGTTTTCTGCATGCCACCGAATTCCATCATACCTCTTCATAACCAT CCCGGAATGACAGTATTAAGCAAGCTCGTATACGGAACAATGCATGTGAAGTCGTACGATTGGCTCGATTCATCTCAGCCTGCAGATCCAGCACAAGCAA GACCTGCCAAGCTTGTTAGAGACGAGGATACGACAGCACCATGCAATGCAACGGTTCTTTATCCAACCACTGGAGGCAACATCCACTGTTTCAGGGCTGT GACACCCTGCGCAATCTTCGACATTCTATCTCCTCCTTACTCTTCAGATCATGGAAGGCACTGCTCTTACTTTCGGGTGTCACCAATAAGAGACCTACCT GGTGAAGTTGAGGTGGATGGTGCAACAGTTTCTGAGGTGACATGGCTGGAGGAGTTCCAACCTCCTGATAACTTTGTGATACGGAGAGGTCTATACAAAG GTCCGGTAATTCGAACTTGA
AA sequence Show only first row Show all	>Lus10017645 pacid=23155492 polypeptide=Lus10017645 locus=Lus10017645.g ID=Lus10017645.BGIv1.0 annot-version=v1.0 MPYYIQRLYNTCKSSLSTNGPVSEEALEKVRNMLEKIKPSDIGLEQEAQLVRNWSGPVQERNGRRQTLPPIKYLHLHECDSFSIGVFCMPPNSIIPLHNH PGMTVLSKLVYGTMHVKSYDWLDSSQPADPAQARPAKLVRDEDTTAPCNATVLYPTTGGNIHCFRAVTPCAIFDILSPPYSSDHGRHCSYFRVSPIRDLP GEVEVDGATVSEVTWLEEFQPPDNFVIRRGLYKGPVIRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58670			Protein of unknown function (D...		Lus10017645 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	2.8	0.8703
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	4.2	0.8252
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10009537 [exp]	11.3	0.8233
					Lus10043270 [exp]	19.6	0.8174
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	20.6	0.8032
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	33.4	0.8296
AT3G62550			Adenine nucleotide alpha hydro...		Lus10025033 [exp]	39.6	0.8219
AT5G65100	EIL		Ethylene insensitive 3 family ...		Lus10014331 [exp]	53.2	0.7892
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	55.2	0.7841
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	59.3	0.7974

Compare expression of checked genes

Lus10017645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.