Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42700 921 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033604 [exp] 1041 / 0 AT2G42700 702 / 0.0 unknown protein Lus10033605 [exp] 311 / 2e-101 AT2G42700 214 / 1e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142900 [exp] 1050 / 0 AT2G42700 988 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10017646 pacid=23155518 polypeptide=Lus10017646 locus=Lus10017646.g ID=Lus10017646.BGIv1.0 annot-version=v1.0 ATGGCCGCCTTGGTGGATGTCACTAAATCATGCCTCGATTCCATCATTCAGATGAGAGAACATTTGGAGGGTGCCATTATTTATCTGGATTCGGGATGCA CAGAGAGCTTTCAATTTGCTGGAGCATTTCCTGTGTTGCTGGACCTTGAAGTTCGAGCTGTGTGCAGCCTTGAAAATATGTCTTCTCTTGATGCGGTGGT GAGTTGGAACTCAAACAGTGATGTTGCAAGGAAGATCGTGGTTTTTACGTCTCGCTTCTTGAGTGATGCACATCGTTACATCTTACGGTGTCTGAGCACA CATGAGAATGTTCAGAAATGTACAGTTTATACTTCTATCTCAGAGACCTCTCACTCAGCGTATCCAGATTCACCTCTGGGGCCGGATGCTTACCATGAGT ATGAATCCTTGCTTCTTCAAGATTTTGATGAGCTTGTAAAGAAGGGTGGAAAGAAGGCTGATTCCGTAGAAGACATGAAGTTCCAGGGAAATTTAAGCTT TGAGAAAGAAGGATGGGCACAACTCACATTCGAGGAAGAAGGTGCTTCCCGTCTTGATGCTAGTTCAAGCAGAAGAGAGAACGACAGTATAGATTCAAAG TTGGTTGTTTCAGTACACCATTTCCCAATGCTTTTGTGTCCTTTGTCCCGTAGAGTCTTCGTCTTACCATCAGAGGGATCAGTTGCCGAAGCATCTTTAT CATCTGAAAATGAGGATTCTCTCAGTCCTGGACTACCAGCAATCAGTACAGGGGTGCTTGCAGATAGTGAAGATGTTCTACCTGGAGCCCTTCTTACTGC ACATTTCCTTTATCATTTAGCTGCAAAGATGGATCTAAAGCTGGAAATATTTTCCCTTGGAGATCTTTCAAAGACAGTTGGCAAGATTATGACAGACATG TCAAGTCTATATGATGTGGGCCGTCGGAAGCGTTCAGCAGGGTTGTTGATAATTGACCGGACGCTGGATCTCCTCACTCCATGCTTCCATGCGGATTCAC TTGTTGACCGCATGTTCTCAGCTTTACCCAGAAGGGAGAGAGTATCCCAGTCTCAGGTCAAAGACTCACAGAGCCAGCTCAAACTCCGTTCTTCAAACCT ACAACGTGCTCCTCTTGGTGTAAAGATACCGCTTGCAGAAATATTAAGCGATGAAATAAAGGAGTGTCAGCTTTTAGAAAGAATCGAAGCTTTCCTAGAT GGTTGGGATACCCAGAAATCTTCTCTTCCCGTTGCTCAACTGTTTAATGGATCCTTCGTCTCCACTGAAAGTTTTCTGGGCACGGCATTTATGGAGGCCT TATTAGATAGAAGAACCAAAGATGGAGCATTGCTGGTTAAAAGGTGGCTGCAGGAAACCCTGCATCGTGAAAAAATCAGTTTAGGTTCTAAAACTCGTTC CGGGTTCGCTTCAGCTGAAGTCCAAGCAATGGTAAAAGCACTGGCGAAAAACCAATCTTCATTGGTGAAAAACAAAGGAGTTATCCTGTTGGCAGCTGCT GCAATTTCAGCCTTTGAAGCATCATTTTCTGCTCGATGGGATGCATTCATCAGTGCCGAGAAAATACTAAATGCAAGCGCTGAAGACACGAGCCAGAATC TTGCTGCTCAAATCGTCGATCTTGTTAACAAGAGTGGTTTAATTGGAGGAATGGAATCCTCACAAGGATTGATTTCTTTCCAAGATGCATTGCTGCTCAT GATTGCTGGTTACATGTTAGCCGGCGAGAATTTCCCTACATCAGGGTCAGGAGGTCCCTTTTCGTGGCAAGAGGAGCACTTCATGAAAGAAGCCGTCGTA GAAGTGATCCTCGAAAAGGCGCCAGTAGCCAAGCTTAAGTTTCTCGAAGGTCTAAAGGAAGCGCTTGAGGCAAACTTAAACAGACTGAGATCCAAAGACG CTGCTGAATCATCGGAGGATCACATCGACCTTGATGATTTGGATGATGACCAATGGGGTAAGTGGGGCGACGAGGAAGAAGAAGAAGAAGCCATTGATAA GAAGAACAAAGATCAGTTGTACGACGACATGCAGCTGAAGCTGGAGTTACGTGATAAAGTCGATAGCTTCTTCAAGTTCCTCCACAAGTTATCCATGGTG AGGATGAAGAGCGTTCCGTTGAAGGACGGTTTGTTCTCGGGGGGAAGCAATTTCGGAGGCGAGACGGACTTGTACAGAGGATTGTTATACAAGGTACTGA CAAGAGTGTTGAGCAAAGCTGATATTCCGGGAATGGAGTACCATTCCTCAACCGTCGGCAGACTGTTCAAGAGTAGTTTTGGAAGGTTTGTTGGACAGGC GAAGCCAAGCCTAGGAGATCAGAACATCATTATGGTTTTCGTCGTTGGAGGCATCAACGCTGTTGAGGTGCTGGAAGTTCAGGAGGCTTTGTCGGAAAGC GAAAGGCCAGATGTGGAACTGATTCTTGGGGGAACGACAATCCTTACACCAGATGATATGTTTGATTTGCTGATTGGAGAATCCAGTTACTTGTGA
AA sequence Show only first row Show all	>Lus10017646 pacid=23155518 polypeptide=Lus10017646 locus=Lus10017646.g ID=Lus10017646.BGIv1.0 annot-version=v1.0 MAALVDVTKSCLDSIIQMREHLEGAIIYLDSGCTESFQFAGAFPVLLDLEVRAVCSLENMSSLDAVVSWNSNSDVARKIVVFTSRFLSDAHRYILRCLST HENVQKCTVYTSISETSHSAYPDSPLGPDAYHEYESLLLQDFDELVKKGGKKADSVEDMKFQGNLSFEKEGWAQLTFEEEGASRLDASSSRRENDSIDSK LVVSVHHFPMLLCPLSRRVFVLPSEGSVAEASLSSENEDSLSPGLPAISTGVLADSEDVLPGALLTAHFLYHLAAKMDLKLEIFSLGDLSKTVGKIMTDM SSLYDVGRRKRSAGLLIIDRTLDLLTPCFHADSLVDRMFSALPRRERVSQSQVKDSQSQLKLRSSNLQRAPLGVKIPLAEILSDEIKECQLLERIEAFLD GWDTQKSSLPVAQLFNGSFVSTESFLGTAFMEALLDRRTKDGALLVKRWLQETLHREKISLGSKTRSGFASAEVQAMVKALAKNQSSLVKNKGVILLAAA AISAFEASFSARWDAFISAEKILNASAEDTSQNLAAQIVDLVNKSGLIGGMESSQGLISFQDALLLMIAGYMLAGENFPTSGSGGPFSWQEEHFMKEAVV EVILEKAPVAKLKFLEGLKEALEANLNRLRSKDAAESSEDHIDLDDLDDDQWGKWGDEEEEEEAIDKKNKDQLYDDMQLKLELRDKVDSFFKFLHKLSMV RMKSVPLKDGLFSGGSNFGGETDLYRGLLYKVLTRVLSKADIPGMEYHSSTVGRLFKSSFGRFVGQAKPSLGDQNIIMVFVVGGINAVEVLEVQEALSES ERPDVELILGGTTILTPDDMFDLLIGESSYL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42700			unknown protein		Lus10017646 [exp]	0	1
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039813 [exp]	3.9	0.9101
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	10.2	0.9021
AT5G13500			unknown protein		Lus10036037 [exp]	10.8	0.9041
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	11.0	0.9072
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	24.0	0.8905
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10004784 [exp]	25.7	0.8663
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	26.1	0.8948
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	27.0	0.8984
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	28.7	0.8937
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	29.6	0.8851

Compare expression of checked genes

Lus10017646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.