Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58690 568 / 0 Protein kinase superfamily protein (.1) AT1G54820 342 / 1e-114 Protein kinase superfamily protein (.1) AT1G61860 305 / 3e-101 Protein kinase superfamily protein (.1) AT5G13160 302 / 5e-99 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G20530 298 / 1e-98 Protein kinase superfamily protein (.1) AT3G07070 297 / 1e-97 Protein kinase superfamily protein (.1) AT5G02800 291 / 6e-96 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G18610 292 / 2e-94 Protein kinase superfamily protein (.1.2) AT3G24790 285 / 9e-94 Protein kinase superfamily protein (.1) AT4G02010 296 / 2e-93 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033606 [exp] 752 / 0 AT3G58690 606 / 0.0 Protein kinase superfamily protein (.1) Lus10029948 [exp] 375 / 8e-127 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 367 / 1e-123 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10043050 [exp] 302 / 8e-100 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 303 / 2e-99 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10011148 [exp] 301 / 2e-99 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10041426 [exp] 297 / 4e-98 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040050 [exp] 295 / 5e-97 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10033966 [exp] 296 / 4e-96 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143100 [exp] 598 / 0 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 394 / 4e-135 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 365 / 5e-124 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 310 / 3e-103 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 310 / 4e-103 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 309 / 1e-101 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.004G018500 [exp] 301 / 9e-100 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 299 / 4e-99 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 301 / 9e-99 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G046500 [exp] 298 / 2e-98 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017647 pacid=23155450 polypeptide=Lus10017647 locus=Lus10017647.g ID=Lus10017647.BGIv1.0 annot-version=v1.0 ATGGTAGCCGACGACGATGATTACAGAAGGAAAGCTCGCCTTGCACTGCTGGCCGTCGTGGTGATCTCCTCCATGGCCATCTCTGCTCTTCTCGTTGCGT TTAGCTACTACTGCTACATTCGTAACAAGGTCTCCCGACGCCTTGCGAGCCGGAAGAGGTTTGATAACGATGATGATGGTGGCTTTTCTGGTGTTGAAGT GACCACTGACAAAGGACTTCATGTGTTCACATTCAAGCAGCTTCATTCTGCTACTGGTGGCTTCAGCAAGTCGAATGTAGTAGGTCATGGTGGATTTGGC TCGGTCTATCGTGGTGTTCTTAGTAATGGAAGGAAAGTTGCAATTAAGGTCATGGATCAAGAAGGGAAGCAGGGAGAAGAAGAATTTGAAGTGGAGGTAG AACTGTTGAGTCGGCTGCGCTCCCCGTACTTGTTAGCATTAATGGGGTACTGCTCGGGCAACAATCGTAAGCTGCTAGTTTACGATTTCATGGCGAACGG TGGCCTGCAAGAACATTTGTATCCTCTCCCTGGATCAAATGCGACATACAGGAAGTTGGACTGGGAAACAAGGCTGAGAATCGCCCTAGAAGCTGCAAAG GGCTTGGAATATCTCCATGAACATGTCAGTCCTCCGGTCATTCACAGAGACTTCAAGAGCAGCAATATCCTCCTAGACAAAAGCTTCCACGCCAAAGTTT CCGATTTCGGATTAGCCAAGCTGGGACCCGACAGAGTTAGTGAGCATGTCTCCACTCGAGTCCTTGGCACTCAAGGATATGTTGCCCCCGAGTACGCATT AACAGGGCACTTGACCACAAAGTCAGACGTCTACAGCTACGGTGTGGTTCTGCTGGAGTTGCTCACCGGGAGAGTTCCGGTCGACATGAAGAGACCATTT GGCGAAGGCGTTCTCGTATCTTGGGCGCTACCAAGGCTGACAGACAGAGATCAGGTTCTCCAGATAATGGATCCAGCGTTGGAAGGTCAGTACTCTATGA AAGAGGTTGTTCAAGTAGCAGCAATCGCGGCAATGTGCGTTCAAGCGGAGGCAGATTATAGGCCATTGATGGCTGATGTGGTGCAGTCGTTAGTCCCACT GGTTCGATCGACTTCGAAGTTGGGAACTTGCTCTAGCTTCCATGCTCCCAAGTCTCCTATGCCACAGGAAGTTGGTAGAGCAAGAGTTTAG
AA sequence Show only first row Show all	>Lus10017647 pacid=23155450 polypeptide=Lus10017647 locus=Lus10017647.g ID=Lus10017647.BGIv1.0 annot-version=v1.0 MVADDDDYRRKARLALLAVVVISSMAISALLVAFSYYCYIRNKVSRRLASRKRFDNDDDGGFSGVEVTTDKGLHVFTFKQLHSATGGFSKSNVVGHGGFG SVYRGVLSNGRKVAIKVMDQEGKQGEEEFEVEVELLSRLRSPYLLALMGYCSGNNRKLLVYDFMANGGLQEHLYPLPGSNATYRKLDWETRLRIALEAAK GLEYLHEHVSPPVIHRDFKSSNILLDKSFHAKVSDFGLAKLGPDRVSEHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPF GEGVLVSWALPRLTDRDQVLQIMDPALEGQYSMKEVVQVAAIAAMCVQAEADYRPLMADVVQSLVPLVRSTSKLGTCSSFHAPKSPMPQEVGRARV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58690			Protein kinase superfamily pro...		Lus10017647 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	4.1	0.9649
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	6.5	0.9641
AT5G19730			Pectin lyase-like superfamily ...		Lus10011132 [exp]	7.9	0.9442
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	7.9	0.9457
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Lus10012827 [exp]	8.5	0.9387
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	8.5	0.9564
AT3G18800			unknown protein		Lus10033505 [exp]	10.4	0.9297
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	14.0	0.9477
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	16.0	0.9470
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	17.8	0.9466

Compare expression of checked genes

Lus10017647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.