Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42740 315 / 1e-111 RPL16A ribosomal protein large subunit 16A (.1) AT5G45775 315 / 1e-111 Ribosomal L5P family protein (.1.2) AT4G18730 315 / 1e-111 RPL16B ribosomal protein L16B (.1) AT3G58700 315 / 1e-111 Ribosomal L5P family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033607 [exp] 327 / 3e-116 AT2G42740 362 / 7e-130 ribosomal protein large subunit 16A (.1) Lus10020715 [exp] 321 / 5e-114 AT2G42740 359 / 5e-129 ribosomal protein large subunit 16A (.1) Lus10029824 [exp] 309 / 4e-109 AT2G42740 347 / 5e-124 ribosomal protein large subunit 16A (.1) Lus10007915 [exp] 51 / 6e-08 AT4G01310 364 / 3e-128 Ribosomal L5P family protein (.1) Lus10036390 [exp] 51 / 9e-08 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G069200 [exp] 320 / 2e-113 AT2G42740 318 / 1e-112 ribosomal protein large subunit 16A (.1) Potri.011G068900 [exp] 319 / 2e-113 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181600 [exp] 319 / 2e-113 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181501 [exp] 319 / 2e-113 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.002G109701 [exp] 112 / 3e-33 AT2G42740 127 / 5e-39 ribosomal protein large subunit 16A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00673 [flax] [poplar] Ribosomal_L5_C ribosomal L5P family C-terminus CL0652 [flax] [poplar] S24e_L23_L15e PF00281 [flax] [poplar] Ribosomal_L5 Ribosomal protein L5
Representative CDS sequence Show only first row Show all	>Lus10017648 pacid=23155489 polypeptide=Lus10017648 locus=Lus10017648.g ID=Lus10017648.BGIv1.0 annot-version=v1.0 ATGAGGGAAATCAAGGTCCAGAAGCTGGTCCTCAACATATCCGTCGGCGAGAGCGGCGATCGCCTCACCAGAGCTGCTAAGGTGTTGGAACAACTCAGTG GACAGACCCCTGTCTTCTCCAAAGCAAGGTACACTGTTAGGTCCTTTGGTATCAGGCGTAATGAGAAGATTGCCTGCTATGTCACTGTGAGAGGAGACAA GGCGATGCAACTGTTGGAAAGTGGATTGAAGGTGAAGGAGTACGAACTCCTCAGGAGGAACTTTAGCGATACTGGATGCTTTGGGTTCGGTATTCAGGAG CACATTGATTTGGGTATCAAGTACGATCCTTCCACTGGTATTTACGGAATGGACTTCTTTGTCGTCCTCGAGCGACCTGGGTACCGTGTTGCCCGTCGCC GTAGGTGCAAGGCCCGCGTTGGTATTCACCAGAGGGTAACCAAGGATGATGCCATGAAGTGGTTCCAGGTCAAATATGAAGGAGTTATCCTCAACAAGGC TCAGAACATTACTGGTTAA
AA sequence Show only first row Show all	>Lus10017648 pacid=23155489 polypeptide=Lus10017648 locus=Lus10017648.g ID=Lus10017648.BGIv1.0 annot-version=v1.0 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQE HIDLGIKYDPSTGIYGMDFFVVLERPGYRVARRRRCKARVGIHQRVTKDDAMKWFQVKYEGVILNKAQNITG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10017648 [exp]	0	1
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	1.0	0.9823
AT1G48830			Ribosomal protein S7e family p...		Lus10028789 [exp]	2.4	0.9772
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	2.4	0.9779
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	3.5	0.9764
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10035133 [exp]	5.7	0.9543
AT3G16080			Zinc-binding ribosomal protein...		Lus10037549 [exp]	5.9	0.9661
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	6.3	0.9684
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	8.4	0.9599
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	8.8	0.9675
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10015123 [exp]	8.8	0.9563

Compare expression of checked genes

Lus10017648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.