Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58640 986 / 0 Mitogen activated protein kinase kinase kinase-related (.1.2) AT2G31010 949 / 0 Protein kinase superfamily protein (.1.2) AT2G42640 610 / 0 Mitogen activated protein kinase kinase kinase-related (.1) AT1G73660 265 / 2e-75 protein tyrosine kinase family protein (.1) AT5G11850 261 / 6e-75 Protein kinase superfamily protein (.1) AT5G03730 256 / 2e-73 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G18160 258 / 3e-73 Protein kinase superfamily protein (.1) AT1G08720 254 / 3e-72 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT4G24480 241 / 2e-67 Protein kinase superfamily protein (.1) AT5G49470 230 / 5e-67 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029833 [exp] 1172 / 0 AT3G58640 1057 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10020708 [exp] 1078 / 0 AT3G58640 1020 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10033608 [exp] 696 / 0 AT3G58640 1057 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10023865 [exp] 261 / 5e-75 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 260 / 9e-75 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10027247 [exp] 260 / 3e-74 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 257 / 1e-73 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 251 / 1e-71 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 251 / 1e-71 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214400 [exp] 1118 / 0 AT3G58640 1197 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.014G142700 [exp] 1117 / 0 AT3G58640 1174 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.005G047600 [exp] 262 / 7e-75 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 262 / 8e-75 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 263 / 9e-75 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.016G095750 [exp] 259 / 1e-74 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.013G034800 [exp] 258 / 1e-73 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 258 / 1e-73 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 258 / 5e-73 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G153100 [exp] 253 / 1e-71 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10017649 pacid=23155557 polypeptide=Lus10017649 locus=Lus10017649.g ID=Lus10017649.BGIv1.0 annot-version=v1.0 ATGGAGGAGATGCGAGATGATTCAGGGTCAGCAGAGCAAGGGCCTTCTGGTGCAGCATGGTGGGGTTCTGATTTTATGGAGAAATTTGGCTCTGTTTCGA TGCATCCCCAAGAGGATAGTTTGAGTAATAAAGAATCACCTCGAACTCATGAAGAAGATAGCTTATCTTCACAGACTGCGTCACAAGTTTTATGGAGCAT TGGAATGCTTTCTGAACCAATACCAAATGGCTTCTACTCTGTCCAACCTGATAAAAGACTCAAGGAGCATTTTGAGAGCCTTCCAACCTTGGATGAACTC CATGCTCTTGGAAATGAGGCTCTCAGGGCGGATGTAATTGTTGTAGATGCTAAGAAAGATAAGAAGCTGTCAATGTTGAAGCAGTTAATTGTGACACTGG TGAGAGGATTGAGTGCTAATCCTGCTTCTATGATAAAGAAGATAGCTGGACTGGTGTCTGACTTTCACAAAAGACCTAGTGTTGGAAGTCCTGCAAGAAC TTGTGCAGAAGAAACTTATCACATGCTTCAGAACCGAGGTGTTCAATTACTTGGGCAAATAAAGCATGGTTCATGCCGTCCTCGAGCTATTTTGTTCAAA GTTCTAGCAGACACTGTAGGTCTTGAAAGTAGGCTTGTGGTGGGTTTGCCAAATGACGGATCTGTTGAGTGTACAGACTCGTATAAGCACATGTCTGTGA TAGTTGTGTTGAATTCGGTGGAACTATTGGTAGATCTTATGCGTTTTCCTGGTCAGTTAATGCCACGTGCTGAAAAAGATGAGGGTCTTCAGTTCCATCG CAAATTAGAAGGATCTTCAAATGCTTCTGGCCCTGCATTGAGAAATATGATGTTACGTTCTACTTCATGTCTGGATAGAAAATTAAGGCATGCAGTGTCT TTCCCTCTGAATAATCGTTGTTGCATTGATTTGTTTCATGTTGCTCTTTTATCGCATAGTGATCCCAATATCGCTGCAACATTTTGGCGGCGTAGCCGGA AAAAGGTGTTAGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCATCATTAAGGGTACGTGGAAGGTCTATGCTAGGTGGTGACAGGCACTCGAT TAGAGATTATCCCGAGGATGTAGCCAGCTCAAGATCAGAAGGAGCATCAACGTCATCGGCGACTCGTAGATTAAGAAGAAGGAGCATGAGCATGACCCCG GAGATTGGTGATGATATCGTCAGGGCTGTGCGTGCCATGAATGAAAGTATGAAGCAAAACCGTCTAGTGAGGGAGCAAGGAGATGGCACATTTTCTACTA TTAACTCAAATGACAAGGACGGCCAATCAGATCTTCAAAATAATGTGGATCACAAAAACTCTCAGAAGGCAATGTCACTACCGTCCTCTCCGCATGGATA TAGCAGCCAAGCACTGGAGAGATATGAGCCTTCAAGCTCTTCGACAAATGTTGAATTTGTCTCAATGTGGAATAAAGTCCTTGAATCGCCCATGTTCCAG AATAAACCTCTGTTACCTTATGACGAATGGACTATTGACTTTTCAGAAATAAGTGTCGGAACTCGTGTTGGGATAGGTTTTTTCGGTGAAGTTTTCCGTG GTGTATGGAACGGAACAGAAGTTGCTATCAAAGTCTTCTTAGAGCAAGATCTAACAGCTGAAAACATGGAAGACTTTTGCAATGAAATATCCATTCTTAG TCGTCTGCGGCATCCTAATGTCAGTCAGTTGATTCATCCTGCTCTTGCAGTCATATTGTTTCTGGGTGCTTGTATAAAGCCTCCACGATTGTCAATGGTC ACGGAGTACATGGAAATGGGATCCTTGTATTACCTGATCCATATGAGTGGCCAGAAGAAGAAACTTAGTTGGCGGAGGCGGCTTAAAATGCTGCGTGATA TATGCAGAGGGCTGATGTGTATACACCGGATGAACATAGTCCACCGTGATCTCAAGAGCGCAAATTGTCTAGTGAACAGGCATTGGACCGTAAAGATCTG CGATTTCGGCCTATCGAGAATCATGATGACAAAACCGGTCGTCGACTCGTCTTCAGCTGGAACCCCGGAATGGATGGCTCCTGAACTCATCCGCAGCGAA CCTTTCACCGAGAAATGCGACATTTTCAGCCTTGGCGTTTTAATGTGGGAGCTCTGCACTCTCAACAGACCTTGGGAAGGAGTCCCTCCTGAAAGAGTTG TGTATGCTGTTGCGAACGAGGGATCACGGCTGGAGATCCCTGAAGGTCCTCTGGGAAGGCTGATTTCAGACTGCTGGGCGGAACCGGATCAGCGGCCAAG CTGCGAAGAAATACTGTCTCGGTTGCTCGACTGCGAGTACACCCTTTGCTGA
AA sequence Show only first row Show all	>Lus10017649 pacid=23155557 polypeptide=Lus10017649 locus=Lus10017649.g ID=Lus10017649.BGIv1.0 annot-version=v1.0 MEEMRDDSGSAEQGPSGAAWWGSDFMEKFGSVSMHPQEDSLSNKESPRTHEEDSLSSQTASQVLWSIGMLSEPIPNGFYSVQPDKRLKEHFESLPTLDEL HALGNEALRADVIVVDAKKDKKLSMLKQLIVTLVRGLSANPASMIKKIAGLVSDFHKRPSVGSPARTCAEETYHMLQNRGVQLLGQIKHGSCRPRAILFK VLADTVGLESRLVVGLPNDGSVECTDSYKHMSVIVVLNSVELLVDLMRFPGQLMPRAEKDEGLQFHRKLEGSSNASGPALRNMMLRSTSCLDRKLRHAVS FPLNNRCCIDLFHVALLSHSDPNIAATFWRRSRKKVLAEQRTASSSPEHPSLRVRGRSMLGGDRHSIRDYPEDVASSRSEGASTSSATRRLRRRSMSMTP EIGDDIVRAVRAMNESMKQNRLVREQGDGTFSTINSNDKDGQSDLQNNVDHKNSQKAMSLPSSPHGYSSQALERYEPSSSSTNVEFVSMWNKVLESPMFQ NKPLLPYDEWTIDFSEISVGTRVGIGFFGEVFRGVWNGTEVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVSQLIHPALAVILFLGACIKPPRLSMV TEYMEMGSLYYLIHMSGQKKKLSWRRRLKMLRDICRGLMCIHRMNIVHRDLKSANCLVNRHWTVKICDFGLSRIMMTKPVVDSSSAGTPEWMAPELIRSE PFTEKCDIFSLGVLMWELCTLNRPWEGVPPERVVYAVANEGSRLEIPEGPLGRLISDCWAEPDQRPSCEEILSRLLDCEYTLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	0	1
AT3G58640			Mitogen activated protein kina...		Lus10033608 [exp]	1.0	0.9183
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	2.4	0.9060
AT4G24840			unknown protein		Lus10009908 [exp]	2.8	0.9166
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	4.9	0.9027
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	5.5	0.8936
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	7.1	0.8558
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10036156 [exp]	9.2	0.8860
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	15.0	0.8591
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	15.4	0.8857
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	17.2	0.8770

Compare expression of checked genes

Lus10017649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.