Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53310 272 / 1e-86 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT2G42600 264 / 1e-83 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT3G14940 261 / 1e-82 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1) AT1G68750 95 / 4e-23 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017653 [exp] 331 / 1e-108 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10033610 [exp] 331 / 1e-108 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10020701 [exp] 306 / 3e-99 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10029837 [exp] 302 / 7e-98 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10035050 [exp] 99 / 1e-24 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 97 / 7e-24 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214100 [exp] 284 / 5e-91 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Potri.011G110700 [exp] 267 / 1e-84 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.001G391900 [exp] 260 / 3e-82 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.008G114200 [exp] 95 / 4e-23 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.010G131800 [exp] 94 / 1e-22 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00311 [flax] [poplar] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Lus10017651 pacid=23155461 polypeptide=Lus10017651 locus=Lus10017651.g ID=Lus10017651.BGIv1.0 annot-version=v1.0 ATGCTTCAAGATATGTACAACCAGTGGCCGTTCTTCCGAGTCACGATTGATCTGGTCGAAATGGTTTTCGCCAAGGGCGATCCCGAGATTGCTGCTCTGT ACGACAAGCTCCTCGTGTCACCAGAATTGCGTCCGTTTGGTGACCAGTTGAGATCCAAGTACCTTCAAACTAAGGACTTCCTCCTCCAGATTGCTGGCCA CAAAGAAGTGTTGGAAGGAGATCCATACCTGAAGCAGAGGCTTCGTCTCCGCGATGCATATATCACAACCCTCAACGTCTCCCAAGCTTACACCCTGAAG CGTGTTCGAGACCCTGACTACCACGTGGCCCTGAGGCCCCACCTGTCCAAGGAATACAACGATGGGATGAAGCCCGCTGCTGAGCTGTTGAAGCTTAACC CGACGAGCGAGTATGCTCCCGGCCTGGAAGACACTCTCATTCTGACCATGAAAGGTATTGCTGCCGGCCTTCAAAACACAGGCTAA
AA sequence Show only first row Show all	>Lus10017651 pacid=23155461 polypeptide=Lus10017651 locus=Lus10017651.g ID=Lus10017651.BGIv1.0 annot-version=v1.0 MLQDMYNQWPFFRVTIDLVEMVFAKGDPEIAALYDKLLVSPELRPFGDQLRSKYLQTKDFLLQIAGHKEVLEGDPYLKQRLRLRDAYITTLNVSQAYTLK RVRDPDYHVALRPHLSKEYNDGMKPAAELLKLNPTSEYAPGLEDTLILTMKGIAAGLQNTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	0	1
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	1.7	0.9122
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	2.0	0.9028
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10036710 [exp]	2.6	0.8577
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	3.0	0.8565
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	3.2	0.8702
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	3.5	0.8972
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	4.9	0.8910
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	5.5	0.8384
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	6.0	0.8436
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	6.0	0.8692

Compare expression of checked genes

Lus10017651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.