Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53310 1697 / 0 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT2G42600 1684 / 0 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT3G14940 1682 / 0 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1) AT1G68750 521 / 3e-169 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1) AT3G42628 71 / 4e-15 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033610 [exp] 1944 / 0 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10029837 [exp] 1851 / 0 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10020701 [exp] 1850 / 0 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10035050 [exp] 527 / 7e-171 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 524 / 6e-170 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10000065 [exp] 390 / 3e-130 AT3G14940 364 / 9e-121 phosphoenolpyruvate carboxylase 3 (.1) Lus10017651 [exp] 333 / 8e-109 AT1G53310 273 / 8e-87 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214100 [exp] 1736 / 0 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Potri.011G110700 [exp] 1723 / 0 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.001G391900 [exp] 1721 / 0 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.008G114200 [exp] 516 / 6e-167 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.010G131800 [exp] 513 / 9e-166 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00311 [flax] [poplar] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Lus10017653 pacid=23155533 polypeptide=Lus10017653 locus=Lus10017653.g ID=Lus10017653.BGIv1.0 annot-version=v1.0 ATGGCGGCGCCTCTGCCGAATCGCAACCACTTGGAGAAGACAACCTCCATTGACGCCCAGCTCCGCCTCTTAGCTCCCAGGAAAGTCTCCGAGGATGACA AGCTCGTCGAGTACGACGCTCTCTTGCTCGATCGCTTCCTCGACATCTTGCACGATTTGCACGGCGAGGACATCAGAGAAACGGTACAAGAGTGTTATGA GCTATCAGCGGAGTATGAGAGGAAGCGAGATCCTCAGAAGCTTGAGGAGCTAGGGAAAGTGATAACGAGTTTGGATCCTGGAGATTCGATTGTGCTTTCG AAATCCTTCTCCAACATGCTTACTCTGGCCAATTTGGCCGAGGAGGTACAGATCGCGTACAGGAGGAGGATCAAGCTGAAGAAGGGGGATTTTGCTGACG AGAACTCGGCAACGACTGAATCGGATATTGAGGAGACGATTAAGAGGCTTACTGTTCAGTTGAAGAAGTCTCCTGAAGAAGTCTTTGATGCTTTGAAGAA CCAGACTGTGGATTTGGTCTTCACCGCTCATCCTACTCAGTCTGTCCGTAGGTCCTTGCTTCAGAAGCACGGGAGGATTCGTGACTGCTTGACTCAGCTG TATGCTAAGGACATTACTCCTGATGACAAACAGGAACTCGACGAGGCATTGCAGAGAGAGATCCAAGCTGCTTTCCGGACTGATGAGATTCGGAGGACAC CTCCTACTCCACAAGATGAGATGAGGGCAGGAATGAGCTACTTCCATGAGACAATCTGGAAAGGAGTCCCCAAATTCTTGCGCCGTGTCGACACAGCTTT GAAGAACCTTGGTATCAATGAACGCGTTCCTTACAACGCCCCTCTCATTCAGTTCTCTTCCTGGATGGGCGGTGATCGTGATGGAAATCCACGGGTGACT CCTGAAGTGACAAGGGATGTGTGCTTGTTGGCTAGAATGATGGCTGCTAACCTCTATTTCTCACAAATTGAGGATCTCATGTTTGAGATGTCCATGTGGC GCTGCAATGAAGAGCTCCGTGTTCGTGCTGAGGAACTTCACAGGAATTCAAGGAAGGAGGCAAAACACTTCATAGAATTCTGGAAGAAAATCCCTCCAAA TGAGCCGTATAGGGTTCTTCTTGGCGATGTGAGGGACAAACTGTATAATACACGGGAACGTTCTCGACAGTTATTGTCTAGCAATACGTCCGATATTCCT GAGGAATCGACTTTTACCAATCTGGAGCAGTTTCTGGAGCCTCTTGAACTTTGCTACAGATCACTCTGTGCTTGTGGTGATCGTCCCATTGCTGATGGAA GCCTGCTTGATTTCTTACGTCAAGTTTCAACTTTCGGGCTTTCACTAGTTAGGCTAGACATTCGGCAAGAATCCGACAGGCATACAGATGTGCTGAACGC CATTACAAATCATTTGGGCATTGGATCGTATCGTGAATGGTCCGAGGAACAAAGACAGGAATGGCTCCTCTCAGAGCTCTGTGGCAAGCGCCCTCTTTTC GGTTCAGATCTTCCCAAAACCGAAGAAATTGCTGACGTGTTGGACACTCTTCACGTCATTGCCGAGCTCCCAGCTGACAGTTTTGGTGCATACATTATAT CGATGGCTACAGCTCCGTCCGATGTACTTGCTGTTGAGCTTCTGCAACGAGAATGCCACGTGAAGCAACCATTGAGGGTTGTTCCTTTATTCGAGAAGCT TGCTGATCTCGAAGCTGCTCCTGCTGCTGTGGCTCGTCTATTCTCGATTGACTGGTATAAGAACCGAATCAACGGGAAGCAAGAAGTTATGATCGGGTAC TCAGACTCCGGCAAGGATGCCGGGCGTTTCTCCGCTGCTTGGCAGTTATACAAGGCTCAAGAGGAGCTTGTCAAGGTGGCAAAGGAATATGGTGTTAAGC TTACGATGTTCCATGGCCGTGGAGGAACAGTCGGAAGAGGCGGAGGTCCAACCCATCTTGCCATACTGTCTCAACCACCTGACACCGTTCATGGATCACT CCGAGTCACAGTTCAAGGAGAGGTCATTGAGAAGTCCTTTGGTGAAGAACATTTGTGCTTCAGGACACTCCAGCGTTTTACTGCTGCTACACTTGAGCAT GGAATGCATCCTCCTGTATCCCCGAAGCCGGAATGGCGTGCACTCATGGATGAAATGGCTGTTATCTCGACAAAAGAATACCGGTCTATTGTCTTCCAGG AGCCTCGTTTCGTCGAATACTTCCGTCTTGCAACACCGGAGCTGGAGTACGGTCGTATGAACATTGGAAGTAGGCCGTCGAAGAGAAAGCCAAGCGGAGG CATAGAATCGCTTCGTGCGATCCCATGGATTTTCGCCTGGACACAGACAAGATTCCATTTACCAGTATGGCTCGGCTTCGGAGCTGCTTTCAAGCATGTT ATCGACAAGGATATCAAAAACCTCAAAATGCTTCAAGATATGTACAACCAGTGGCCGTTCTTCCGAGTCACGATTGATCTGGTCGAAATGGTTTTCGCCA AGGGCGATCCCGAGATTGCTGCTCTGTACGACAAGCTCCTCGTGTCACCAGAATTGCGTCCGTTTGGTGACCAGTTGAGATCCAAGTACCTTCAAACTAA GGACTTCCTCCTCCAGATTGCTGGCCACAAAGAAGTGTTGGAAGGAGATCCATACCTGAAGCAGAGGCTTCGTCTCCGCGATGCATATATCACAACCCTC AACGTCTCCCAAGCTTACACCCTGAAGCGTGTTCGAGACCCTGACTACCACGTGGCCCTGAGGCCCCACCTGTCCAAGGAATACAACGATGGGATGAAGC CCGCTGCTGAGCTGTTGAAGCTTAACCCGACGAGCGAGTATGCTCCCGGCCTGGAAGACACTCTCATTCTGACCATGAAAGGTATTGCTGCCGGCCTTCA AAACACAGGCTAA
AA sequence Show only first row Show all	>Lus10017653 pacid=23155533 polypeptide=Lus10017653 locus=Lus10017653.g ID=Lus10017653.BGIv1.0 annot-version=v1.0 MAAPLPNRNHLEKTTSIDAQLRLLAPRKVSEDDKLVEYDALLLDRFLDILHDLHGEDIRETVQECYELSAEYERKRDPQKLEELGKVITSLDPGDSIVLS KSFSNMLTLANLAEEVQIAYRRRIKLKKGDFADENSATTESDIEETIKRLTVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRDCLTQL YAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNLGINERVPYNAPLIQFSSWMGGDRDGNPRVT PEVTRDVCLLARMMAANLYFSQIEDLMFEMSMWRCNEELRVRAEELHRNSRKEAKHFIEFWKKIPPNEPYRVLLGDVRDKLYNTRERSRQLLSSNTSDIP EESTFTNLEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLNAITNHLGIGSYREWSEEQRQEWLLSELCGKRPLF GSDLPKTEEIADVLDTLHVIAELPADSFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYKNRINGKQEVMIGY SDSGKDAGRFSAAWQLYKAQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTVHGSLRVTVQGEVIEKSFGEEHLCFRTLQRFTAATLEH GMHPPVSPKPEWRALMDEMAVISTKEYRSIVFQEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHV IDKDIKNLKMLQDMYNQWPFFRVTIDLVEMVFAKGDPEIAALYDKLLVSPELRPFGDQLRSKYLQTKDFLLQIAGHKEVLEGDPYLKQRLRLRDAYITTL NVSQAYTLKRVRDPDYHVALRPHLSKEYNDGMKPAAELLKLNPTSEYAPGLEDTLILTMKGIAAGLQNTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	0	1
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	2.4	0.8941
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	2.8	0.8907
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	3.0	0.8900
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	3.5	0.8755
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Lus10008642 [exp]	6.2	0.8578
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	6.5	0.8722
AT5G05200			Protein kinase superfamily pro...		Lus10012865 [exp]	8.4	0.8775
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	9.2	0.8782
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10029126 [exp]	10.0	0.8616
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10029512 [exp]	11.0	0.8717

Compare expression of checked genes

Lus10017653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.