Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56580 115 / 2e-33 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT5G46230 112 / 8e-33 Protein of unknown function, DUF538 (.1) AT4G24130 111 / 4e-32 Protein of unknown function, DUF538 (.1) AT1G09310 105 / 2e-29 Protein of unknown function, DUF538 (.1) AT1G30020 91 / 3e-24 Protein of unknown function, DUF538 (.1) AT5G49600 82 / 1e-20 Protein of unknown function, DUF538 (.1) AT4G02370 54 / 8e-10 Protein of unknown function, DUF538 (.1) AT3G07470 54 / 1e-09 Protein of unknown function, DUF538 (.1) AT1G02816 53 / 2e-09 Protein of unknown function, DUF538 (.1) AT5G19860 52 / 5e-09 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000355 [exp] 192 / 4e-64 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10013912 [exp] 157 / 2e-50 AT5G46230 123 / 5e-37 Protein of unknown function, DUF538 (.1) Lus10001891 [exp] 154 / 4e-49 AT5G46230 120 / 8e-36 Protein of unknown function, DUF538 (.1) Lus10033613 [exp] 142 / 3e-45 AT1G56580 63 / 4e-14 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10000616 [exp] 136 / 3e-42 AT5G46230 86 / 1e-22 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 114 / 7e-33 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 108 / 6e-31 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 108 / 6e-31 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 107 / 4e-30 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G056700 [exp] 155 / 2e-49 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 153 / 8e-49 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 135 / 6e-42 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 124 / 7e-37 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 122 / 3e-36 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 120 / 2e-35 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 117 / 2e-34 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 115 / 2e-33 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 81 / 4e-20 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 54 / 2e-09 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10017655 pacid=23155584 polypeptide=Lus10017655 locus=Lus10017655.g ID=Lus10017655.BGIv1.0 annot-version=v1.0 ATGGATCCAAAGAAAGGAGCCACGGTGAAGAAGGGCCACGCCGAAGCAATGGAAATGGCGGTGGCTCTGCTCAAAGAGTTCAACCTCCCGGAAGGAATGC TGCCATTAGAAGACGTGATCGAATCCGGGTACGTCAAGGAAACGGGCTACTTCTGGATCGTGCAGAAGAAGGCGGTGAAGCACGAGTTCAAGATGATCGG AAAGCAAGTCAGCTACGACAAGGAGATCAGCAGCTACATCGAGAAGAACAGGGCCAAGAAACTCAAAGGCGTCAAGGCTAAGGAGCTCATGTTGTGGCCG CCCGTCCGCGAGATGGCCGTCGACGAGAATCCTTCGTCCGGGAAAATTCATATTAAGAGTGTTGGTGGTGTCGGCGAGTCTTTCCCGGTGGCTGCTTTCG CCGCCGGTCAGTAG
AA sequence Show only first row Show all	>Lus10017655 pacid=23155584 polypeptide=Lus10017655 locus=Lus10017655.g ID=Lus10017655.BGIv1.0 annot-version=v1.0 MDPKKGATVKKGHAEAMEMAVALLKEFNLPEGMLPLEDVIESGYVKETGYFWIVQKKAVKHEFKMIGKQVSYDKEISSYIEKNRAKKLKGVKAKELMLWP PVREMAVDENPSSGKIHIKSVGGVGESFPVAAFAAGQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10017655 [exp]	0	1
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10017696 [exp]	1.0	0.9818
AT5G11420			Protein of unknown function, D...		Lus10025753 [exp]	4.5	0.9755
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	4.6	0.9700
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	5.2	0.9732
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	7.7	0.9726
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	10.0	0.9658
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	10.2	0.9681
AT5G14020			Endosomal targeting BRO1-like ...		Lus10031997 [exp]	14.5	0.9653
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	15.9	0.9650
					Lus10024349 [exp]	17.5	0.9537

Compare expression of checked genes

Lus10017655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.