Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42380 206 / 1e-64 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT3G58120 203 / 2e-63 bZIP ATBZIP61 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G58110 96 / 2e-22 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G43700 92 / 5e-21 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT4G38900 87 / 6e-19 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G40620 86 / 6e-19 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 84 / 1e-18 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT1G06070 85 / 2e-18 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G31370 82 / 1e-17 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT2G21230 82 / 4e-17 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033630 [exp] 436 / 4e-155 AT2G42380 294 / 7e-99 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Lus10039902 [exp] 227 / 6e-74 AT3G58120 181 / 8e-56 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002185 [exp] 204 / 4e-64 AT3G58120 219 / 1e-71 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008605 [exp] 90 / 3e-20 AT2G40620 276 / 1e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10029773 [exp] 89 / 5e-20 AT1G43700 311 / 6e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10042211 [exp] 89 / 6e-20 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042802 [exp] 89 / 7e-20 AT1G43700 313 / 1e-105 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 88 / 7e-20 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10018899 [exp] 88 / 8e-20 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G091900 [exp] 253 / 8e-83 AT3G58120 285 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G374200 [exp] 246 / 5e-80 AT3G58120 282 / 6e-94 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 244 / 2e-79 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G074900 [exp] 97 / 5e-24 AT2G42380 87 / 3e-20 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.003G014800 [exp] 93 / 2e-21 AT1G58110 304 / 3e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) Potri.002G069500 [exp] 91 / 1e-20 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.019G130000 [exp] 91 / 1e-20 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.005G190700 [exp] 90 / 1e-20 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.013G091400 [exp] 90 / 1e-20 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.004G219100 [exp] 89 / 5e-20 AT1G58110 303 / 8e-101 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF07716 [flax] [poplar] bZIP_2 Basic region leucine zipper
Representative CDS sequence Show only first row Show all	>Lus10017656 pacid=23155573 polypeptide=Lus10017656 locus=Lus10017656.g ID=Lus10017656.BGIv1.0 annot-version=v1.0 ATGGCGCAATTGCCACCCAAAATCCCAACTTTACCTTCCAGCTGGCCGGACTTCTCCTCCGACCAGAAACCCCATTCCGCCGCAGCCCAACCTCCTTCCT CCGCTGCCGCCGCCAACAACAACCACCCTTCATGGGTAGACGAATTCCTCGACTTCTCCTCAGCAAGACGCGGGACCCATCGGAGGTCGGCCAGCGACTC CATCGCCTTCCTCGAGACCCCGTTGATGACCCTCGACGACGACTGTCGTGGCCGTAGCAACACCAACGGAAGCAATAATAATCACATCCAACGCCATGGC CAGCACGATTTCGACAAGTTTGACGACGAGCAGTTCATGTCCATGTTCTCCGTCGACGACATGTCGTCCAACCCCGGCGGTTCCAACTCCGACGACCACG ACAGCATTAACGACGACAAGGAAGCAGCTACTACGACCGGCCAGTCAGAGGACAATTCGCAGCAAACGACGCCCTCTAATGGGGATAATAATGGGGACCG CATATTCGATCCCAAGAGGGTAAAGAGGATATTAGCGAATAGGCAATCAGCGCAACGATCGAGGGTGAGGAAGCTACAGTACATATCGGAGCTCGAACGG AGTGTTACTTCGTTACAGGCCGAAGTGTCGGTGTTGTCGCCGAGGGTTGCATTTCTCGATCATCAAAGGCTTCTGCTTAACGTGGACAACAGTGCTATCA AGCAACGGATCGCTGCTTTGGCTCAAGATAAGATCTTCAAAGATGCTCATCAAGAGGCACTGAAGAGGGAGATAGAGAGACTGAGACAAGTATACCAACA TCAGAACAATAAGAAGGCGGATCATGCTACTGCACAAAACAATGAACCAACTCCCATGACATCAACTGTAGATCAGAAAGAACAACAACTTCTCCAGGTC TAA
AA sequence Show only first row Show all	>Lus10017656 pacid=23155573 polypeptide=Lus10017656 locus=Lus10017656.g ID=Lus10017656.BGIv1.0 annot-version=v1.0 MAQLPPKIPTLPSSWPDFSSDQKPHSAAAQPPSSAAAANNNHPSWVDEFLDFSSARRGTHRRSASDSIAFLETPLMTLDDDCRGRSNTNGSNNNHIQRHG QHDFDKFDDEQFMSMFSVDDMSSNPGGSNSDDHDSINDDKEAATTTGQSEDNSQQTTPSNGDNNGDRIFDPKRVKRILANRQSAQRSRVRKLQYISELER SVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSAIKQRIAALAQDKIFKDAHQEALKREIERLRQVYQHQNNKKADHATAQNNEPTPMTSTVDQKEQQLLQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	0	1
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10020521 [exp]	3.2	0.8971
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	3.5	0.8815
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10038273 [exp]	5.2	0.8774
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10036377 [exp]	6.8	0.8257
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Lus10023359 [exp]	7.9	0.8547
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	8.8	0.8607
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10005370 [exp]	9.8	0.8715
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	16.4	0.8520
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10006510 [exp]	20.9	0.7763
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	25.8	0.8697

Compare expression of checked genes

Lus10017656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.