Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53210 541 / 0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) AT1G29020 234 / 2e-69 Calcium-binding EF-hand family protein (.1) AT1G29025 212 / 6e-61 Calcium-binding EF-hand family protein (.1) AT2G34020 211 / 2e-60 Calcium-binding EF-hand family protein (.1) AT2G34030 201 / 2e-57 Calcium-binding EF-hand family protein (.1) AT5G39670 43 / 0.0002 Calcium-binding EF-hand family protein (.1) AT3G22930 41 / 0.001 CML11 calmodulin-like 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033629 [exp] 874 / 0 AT1G53210 463 / 4e-158 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10042848 [exp] 568 / 0 AT1G53210 800 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10028144 [exp] 377 / 2e-125 AT1G53210 538 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10042369 [exp] 44 / 0.0001 AT5G39670 133 / 2e-39 Calcium-binding EF-hand family protein (.1) Lus10026301 [exp] 44 / 0.0002 AT5G39670 135 / 5e-40 Calcium-binding EF-hand family protein (.1) Lus10041179 [exp] 41 / 0.0002 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 41 / 0.0006 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375500 [exp] 569 / 0 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.004G052800 [exp] 320 / 3e-102 AT1G53210 313 / 2e-99 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375400 [exp] 249 / 6e-74 AT1G53210 249 / 2e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375300 [exp] 232 / 1e-67 AT1G53210 248 / 1e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.010G080900 [exp] 40 / 0.0008 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.005G215700 [exp] 40 / 0.001 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10017657 pacid=23155522 polypeptide=Lus10017657 locus=Lus10017657.g ID=Lus10017657.BGIv1.0 annot-version=v1.0 ATGGCCACCAAAGGATTTCTTCCAACATTCTCTCTGCACACAATCATGCTCATTTCTCTACTAACGTGCATCATCCATGGCGCTCATAGCCGATCTCTCT CGACACCGAACGACGTGTTCGAAGGAGGAGAAATTGACGATCAGCAAAAGAGCTCGATCATTAGGTTGGTTTCTTCTTCGTATGGAAGTAGCTTATCCGA CTGCCATGAGACGTACGGTTTCTTGCCTTGCACGCGAACTATCCCGGGGAATGTGTTTCTGATTGTGGTTTATGGGTACATGATGTTCTTGGCTGCAAAG TTGTTGTCTGGAGGGAGTGAGATTCTTCTGCAAGTGCTTGGTCCTGGGATTGTTGGTGGTCTCTTCTTGCCTGTGCTTGGCTCCCTCCCTGATGCTGCCA TTATTCTCGCATCCGGACTGTCGGGAAGCAAAGAGGCAGCACAAAGTCAGATATCAGTAGGCATGGGAATGATGGCCGGATCAAACGTAATGATGCTCAC CGTGTTGTGGGGATCCTGCCTCATAATCGGAAACGTGGACATTACAGCCTCTGCATCTGCAGATTCAGGAAATCCACCACGACTTTGGCTGTCCAAACTG GGACTTTCAACCGATATCTGGACCTGCTATGGCGCCAGAATCATGCTGATATCTCTGCTACCCTTCGTGATTGTCCAACTGCCACAAGCTTTTCACACCC AAGAAGGCAATGTAGCAGTTCTTGTTTCCCTCACTGTAGCCGTCGTTTTGTTGATAAGCTACAGCCTCTACCAGGTTTTCCAGCCCTGGATTCAGAAAAG AAAGATAGCATATTCAAAGCATAAGCAGTTGATATCAGGGGTTCTAAAGCAGTTGAAGGCAAAGACGTTGGGAAGGCTGTTCATGGATAATGGTCAACCT AACGTAGATGCAATTCAGAAGTTATTCGAGGTAATGGATGAGAACACAGATGGGTATCTAACAGGGAAGGAGTTGAGGGCACTAGTGATAGGAATACAAC TCGAGGACGGAGACATGGATATCGACAATGCAGTATATCATGTGCTGAAAGAATTTGACACATCTCACGATTCGCTTATTGATAAGGACGAGTTCACACA AGGAGTCTCGAGATGGCTTGAGAAGGCTAAGAATTCAGCACTATACGGACATAGGTCGCTGACGGCAAAACTTCTACTTGACTTTGAAGAGTACACAAAG AAAGAACAAGATATTCTAGGAGGGCAGAATGACAATACCAATAGTCCTCGAGGTATAGGCTGGGATGGTGCAAAAGCAGGATTGCTATTGCTCTCAGGAA CATTCATTGCTGCAGCAATTGCAGAGCCTCTGGTTGATGCTGTCAACAACTTCTCGAGCGCTTCAAAGATCCCTCCATTTTTTGTATCGTTTGTCATTTT GCCTTTTGCTAGTTCCAGTGAGATCGTCTCAATCCTAATCTTTGCCAGCAAGAAGAATATGAGATCTGCATCGCTAGCATACTCTGAGATATATGGGTCC GTGACCATGAGTAACATTCTGTCGTTGTCAGTTTTCTTGGGTCTTGTTTACTACCGAGACTTGACATGGAACTTCTCGGCTGAAGTGCTGATAATTCTTG TTGTTTGTATCACCATGGGTTTAATTGCTAGCTTCCACACCAAATTTCCTCTTTGGATGTGCTTTGTGGCTTTCAGTTTGTACCCAATTTCCTTATTCCT GGCTTACATCCTTGATTATGTCGTTGGATGGGCCTAA
AA sequence Show only first row Show all	>Lus10017657 pacid=23155522 polypeptide=Lus10017657 locus=Lus10017657.g ID=Lus10017657.BGIv1.0 annot-version=v1.0 MATKGFLPTFSLHTIMLISLLTCIIHGAHSRSLSTPNDVFEGGEIDDQQKSSIIRLVSSSYGSSLSDCHETYGFLPCTRTIPGNVFLIVVYGYMMFLAAK LLSGGSEILLQVLGPGIVGGLFLPVLGSLPDAAIILASGLSGSKEAAQSQISVGMGMMAGSNVMMLTVLWGSCLIIGNVDITASASADSGNPPRLWLSKL GLSTDIWTCYGARIMLISLLPFVIVQLPQAFHTQEGNVAVLVSLTVAVVLLISYSLYQVFQPWIQKRKIAYSKHKQLISGVLKQLKAKTLGRLFMDNGQP NVDAIQKLFEVMDENTDGYLTGKELRALVIGIQLEDGDMDIDNAVYHVLKEFDTSHDSLIDKDEFTQGVSRWLEKAKNSALYGHRSLTAKLLLDFEEYTK KEQDILGGQNDNTNSPRGIGWDGAKAGLLLLSGTFIAAAIAEPLVDAVNNFSSASKIPPFFVSFVILPFASSSEIVSILIFASKKNMRSASLAYSEIYGS VTMSNILSLSVFLGLVYYRDLTWNFSAEVLIILVVCITMGLIASFHTKFPLWMCFVAFSLYPISLFLAYILDYVVGWA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53210			sodium/calcium exchanger famil...		Lus10017657 [exp]	0	1
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024578 [exp]	4.5	0.8253
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041282 [exp]	4.9	0.7547
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	8.1	0.8202
AT1G17930			Aminotransferase-like, plant m...		Lus10023395 [exp]	9.4	0.6284
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	9.9	0.8202
AT2G32360			Ubiquitin-like superfamily pro...		Lus10027183 [exp]	10.5	0.6579
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	11.5	0.8202
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	12.8	0.8202
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	14.1	0.8202
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	15.2	0.8202

Compare expression of checked genes

Lus10017657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.