Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02060 785 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37230 372 / 4e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 224 / 4e-63 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 220 / 1e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G30290 215 / 2e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16420 206 / 3e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62910 205 / 5e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 206 / 1e-56 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 201 / 2e-55 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 202 / 3e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034721 [exp] 397 / 3e-127 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021645 [exp] 395 / 1e-126 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 223 / 4e-63 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10006373 [exp] 219 / 5e-61 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 214 / 7e-59 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 208 / 3e-58 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10026558 [exp] 211 / 2e-57 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005303 [exp] 207 / 1e-56 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 206 / 2e-56 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G056400 [exp] 894 / 0 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G077400 [exp] 374 / 1e-118 AT2G37230 1050 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 228 / 6e-64 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 219 / 1e-62 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 216 / 3e-60 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 212 / 1e-59 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G015900 [exp] 213 / 4e-59 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 213 / 4e-59 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 205 / 4e-57 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 205 / 6e-57 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017658 pacid=23155473 polypeptide=Lus10017658 locus=Lus10017658.g ID=Lus10017658.BGIv1.0 annot-version=v1.0 ATGAAGGCCGCCGTCAAGTCCAGAAGAGGTCTCTTTCTCTTCATCAGCGACTCTAGGCCTAGGCATTTCTCAACTCGGAGTATCAACAGCAACAACGTCC ATGGCGAGGATGAACGAGTTACCGGCGGCGGAGGCGATAATCGGAGATCCACAAACAAGAAGTCAACTAAGTCGAAATCCATGGCGATGCTAATCAACTT CAGAACGTGGTCAGGTCAGCTCGAGGCTTCTCTCTCGACCATCGCTTCTTCGTTGCCGCTCTCCAAGACGATGGTGATGGAAACTCTCCGCCTCTCGACG AACTCGTCGAACGCCTTGGAGTTCTTCGATTGGGCCTCCCGAACCGGATTCTCTCACGACGAGGACTCCTACTTCTCTATGCTAGGAATCCTAGGCCGCT CTGGTAAGCTCAACGCTGCTCGTAATTTCCTCTTCTCGATCGAGAAGAAGTCTAACGGTGCAGTGAGGCTTCACGATAGGTTCTTCAATAGCTTAATTAG GAGCTTCGGTGAAGCAGGGCTGTTTAATGAGTCTTTGAAAGTTTTCACTTCGATGAAATCGTTAGGAGTGTCTCCGTCTGTCAGGACATTCAATAGTCTC TTCTTGATCTTGCTTAAACGAGGGCGGACGAACATGATCAAGGGCTTGTTCGATGAAATGCTCCAAACCTATGGTGTGTTTCCTGATAATTATACGTTTA ACATCTTGATTAGAGGATACTGTAAGAACTCCATGGTTGATGAGGGATTCAGGTACTTTAATCAGATGGTGGAATCGAATTGCGATCCTGATGTCTGTAC GTATAATACGCTTATCGACGGGTTGTGTAGAGTAGGTAAGGTTAAGATTGCACATAATGTGATGAAGGGGATGGATAAGAAAGATGTGAAGCCTGATGTT ATTACTTACACAACTTTGGTTAGAGGTTACTGCATGAAACAGGATATTGACGAGGCCTTGGTGGTTTTCCAGGAGATGGTTAGTAGGGGTTTAAAACCGA ATGGTATCACTTATAACACTTTGATTAAGGGACTCTGTGAGGCGAAGAAGGTTGATCACATCAGTGAGCTTTTAGGTGGCGCCTTAGGCTGTGGACGTTT TACTCCTGATACTTGTACTTATAATACATTGTTGAACACACACTGCGAAGCGGGTAAACTCGATGAGGCACTGAAGGTTTTTGAGAAGATGATTGAGTTG AAAGCACAACCTGATTCTGCATCATATAGTGTTTTGATCAGGAAGTTGTGTCAGAACAAGGATTTCGACAGGGCAGAGATACTTTTTGATGAGCTGTTCA AGAAAAAGATTCTATTGAGGAATGATGGTTGTACTCCTCTTGTTGCATCATATAGCTGCATGTTCGAGTTCTTGTGTAAAAGTGGAAAGACCTATAAGGC TGATCGGGTGTTCAGGCAGTTAATCAGGAGGGGAAGACAAGATCCTACTTGTTACAAGACATTGATCATGGGACATTGCAGGGAACGTACATTCGAAGAG GGGTATGAGGTTCTGTTGTTGATGCTAAAAAGAGACTACCTCCCTGAATTCGAGACTTATCAGTTGTTAATTGAGGGCCTCTTGCAGAAAGGGGAGCCAG TTCTGGCTAAGGAGACGATAGAGAAGATGCTAAAGAGTGGTTATCTTCCAACAGCAGCCACATTTCATTCTATACTTGGAGAACTACTAGAAAAGGAGCG TGCCCGCGAATCAGCAAACTTTGTAAAAATGATGCTGGACAGGAAGATTAGGCAAAACATAAACCTTTCTACAGAAACTGTGAGATTAATGCTCAGCAGG GGGCATATAAATCATGCATATCAGACCACTGCCTTTCTCTATGACAATGGTTACAAGATTGACATGGAGAAAGTGATGAGTTTCTTGTGCGGGAGTGGGA AGTTGTTGGAGGCTCAGCAAATGATGCTATTCTGGTTGGATAAGGCCAGTAAGCATCACATGATCGATATTGGTACTTGCAACACCATAATTGAGGGTCT CTGTAAGAAGAAGAAGCTTTCAGAAGCATTCGAGTTGTTTGTTGGGTTGGCAGATAGAAACAAACATAGAGAATTAATCTGTGCTGAAGATTTGGCTGCT GCTTTAAATGCCAAGGGAAAAGTAGAAGAAGCCAACTTTGTTAGTAAAAGGACACAGAACCAGTGGCAGTCAGCTCAATTTCTGAAAAACACCTCTGCTG CGCCGAGACCTGAACATCCTTGA
AA sequence Show only first row Show all	>Lus10017658 pacid=23155473 polypeptide=Lus10017658 locus=Lus10017658.g ID=Lus10017658.BGIv1.0 annot-version=v1.0 MKAAVKSRRGLFLFISDSRPRHFSTRSINSNNVHGEDERVTGGGGDNRRSTNKKSTKSKSMAMLINFRTWSGQLEASLSTIASSLPLSKTMVMETLRLST NSSNALEFFDWASRTGFSHDEDSYFSMLGILGRSGKLNAARNFLFSIEKKSNGAVRLHDRFFNSLIRSFGEAGLFNESLKVFTSMKSLGVSPSVRTFNSL FLILLKRGRTNMIKGLFDEMLQTYGVFPDNYTFNILIRGYCKNSMVDEGFRYFNQMVESNCDPDVCTYNTLIDGLCRVGKVKIAHNVMKGMDKKDVKPDV ITYTTLVRGYCMKQDIDEALVVFQEMVSRGLKPNGITYNTLIKGLCEAKKVDHISELLGGALGCGRFTPDTCTYNTLLNTHCEAGKLDEALKVFEKMIEL KAQPDSASYSVLIRKLCQNKDFDRAEILFDELFKKKILLRNDGCTPLVASYSCMFEFLCKSGKTYKADRVFRQLIRRGRQDPTCYKTLIMGHCRERTFEE GYEVLLLMLKRDYLPEFETYQLLIEGLLQKGEPVLAKETIEKMLKSGYLPTAATFHSILGELLEKERARESANFVKMMLDRKIRQNINLSTETVRLMLSR GHINHAYQTTAFLYDNGYKIDMEKVMSFLCGSGKLLEAQQMMLFWLDKASKHHMIDIGTCNTIIEGLCKKKKLSEAFELFVGLADRNKHRELICAEDLAA ALNAKGKVEEANFVSKRTQNQWQSAQFLKNTSAAPRPEHP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	0	1
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	1.4	0.9563
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10017684 [exp]	2.4	0.9364
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	2.8	0.9420
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10040555 [exp]	4.6	0.9201
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10037989 [exp]	6.5	0.9352
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10038115 [exp]	7.9	0.9412
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	8.0	0.9340
AT3G53940			Mitochondrial substrate carrie...		Lus10022597 [exp]	8.3	0.9197
AT1G04210			Leucine-rich repeat protein ki...		Lus10021899 [exp]	12.0	0.9262
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	12.8	0.9368

Compare expression of checked genes

Lus10017658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.