Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033625 [exp] 456 / 8e-158 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1) Lus10004376 [exp] 41 / 0.0004 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238700 [exp] 342 / 5e-120 ND / Potri.008G020500 [exp] 340 / 4e-119 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10017659 pacid=23155552 polypeptide=Lus10017659 locus=Lus10017659.g ID=Lus10017659.BGIv1.0 annot-version=v1.0 ATGCTAATAAAATCTACAGCACTCTTCCTCATCTTCATCTACATCCAAACCACCTTCAAAACCTTCACAATACTGTCCCTCCCTTTCCTCTACGCTTCCC TAATCGCCGCCTTAGTCTCCTTAGCTTCCCACCCGTCGATCGACCTCCCGATCCTCCTCGGGAAATCCTCAGATGGGAGCTTCCCGATTTGGGCTTCGAT CATGTTCAGCCCTTACCTCTACTTCGTCAGGCTGTTCTGTTTCTTACGCCGGCTGGCCAGCGGCGAGGAAGCTTACAGCGAGATCTGCGACGGGGTCTAC GTCGGCGGGTGGCCTTACGCGGCGGAGAAGTTTCCGCCGGGGAATCCGGCGATCGTCGACTGTACCTGTGAGTTTCCCAGGTTGAAGGAGTTTAGAGGGT GCTCGTATCTTTGTGTGCCGACTTGGGACACGAGGTCGCCTCAGCCTGCGGATATTGAGTCGGCTGTTAAGTGGGCTGTCCGGAAGAGGGCTCAGAATCG GCGGGTGTTCGTCCATTGCGCTTATGGGCATGGGAGAAGCGTTGCTGTAATGTGTGCGCTGCTGGTGGCGTTAGGAGTGGTGGAAGACTGGAAAAAGGCT GAGAAGTTTATTGCTGTGAAGAGACCGTATATACGCATGAATTCTCTACACAGGAAGTCCTTGGAAGCGTGGTCCAAACATAGGCTGTCAAAGCCTGGTT CAATGGTTCAACCAACTGCTTCTTAG
AA sequence Show only first row Show all	>Lus10017659 pacid=23155552 polypeptide=Lus10017659 locus=Lus10017659.g ID=Lus10017659.BGIv1.0 annot-version=v1.0 MLIKSTALFLIFIYIQTTFKTFTILSLPFLYASLIAALVSLASHPSIDLPILLGKSSDGSFPIWASIMFSPYLYFVRLFCFLRRLASGEEAYSEICDGVY VGGWPYAAEKFPPGNPAIVDCTCEFPRLKEFRGCSYLCVPTWDTRSPQPADIESAVKWAVRKRAQNRRVFVHCAYGHGRSVAVMCALLVALGVVEDWKKA EKFIAVKRPYIRMNSLHRKSLEAWSKHRLSKPGSMVQPTAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017659 [exp]	0	1
					Lus10032068 [exp]	4.0	0.8149
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	6.9	0.7997
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10038866 [exp]	8.7	0.7910
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	12.0	0.7855
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	12.7	0.7732
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	13.7	0.7922
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10036532 [exp]	14.2	0.7269
AT1G29530			unknown protein		Lus10025373 [exp]	15.5	0.7872
AT3G02910			AIG2-like (avirulence induced ...		Lus10040635 [exp]	19.4	0.7662
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10001751 [exp]	21.5	0.7391

Compare expression of checked genes

Lus10017659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.