Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03770 125 / 1e-32 AtKdtA, KDTA KDO transferase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033622 [exp] 285 / 4e-94 AT5G03770 488 / 7e-172 KDO transferase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095900 [exp] 156 / 2e-44 AT5G03770 538 / 0.0 KDO transferase A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017662 pacid=23155508 polypeptide=Lus10017662 locus=Lus10017662.g ID=Lus10017662.BGIv1.0 annot-version=v1.0 ATGTCAACCATGGTATTAACATTCTGGGGAAGTTCTACTGAAAAAGACAGTCGAATGGGATATCTTGCTTATCTGAACATATCCTGTTTCTCAGTTGCAC ATGGTGTTCTTCACGGTAACTTGTTACCAATTCTTGCTGCAGATTCCACTTGCATTATTAAATTCTCGGATGTCTATGAAGTCCTTCAAGTTTTGGTCAG GATTGGCATTCCCATTGATATCTTTAATGCTAGTACTACACAAGCAATACGCTACCAGCTTCTGCAGGCTCCACCTTCTGTCATTAATTTCGCTGGTGAT TTGAAATATGTGGTAGATCATAAGGCTGCTAAGGAAAATACAACAAGCACGGACGATTTGAAGGAACAGTTATCCAATAGGCATGTGTGGATGGCGGCTT CAATTCATAGAGGTGAAGAACAATGTAACTACTCAAGGTTCCCTAAGCTGTTAAGTTTCTGTTACCTGCACTTAAAAGAATGCCCTTTATCCCAATCATT ATTGTTGCTTGGTGAACTGAGGCATCTATATAGTCCAACTCCAATAGCTGTAATTGGAGGTTCTTTCTATCCTGATTCTGCTGGCCATAACATATCCGAA GCTGCTGTAGCTGGCTGTGCTGTTTTAACTGCTCAACTACTTTCAGGTGTTCATGTTGGCCATTTCGCACACATGATCAATCAAATGCAACGGCTCGATC CTTCTTCGATTGTGCAGGTTTCTGGAAAGGTAGAACTTGAAGAAGCACTTGTCAATCTCTTCAGCGATGCAAAGATTCTAGAAGCACGACGCAGGGCTTT GAAACAAGCATTTGATGCACTGTCGAGTGGAGTCATTTCTAATGTTTGGAACCTCGTAAACACTCATGTCCTTGGGCGACATTGTCATGGAAGAAGAATA CGATGA
AA sequence Show only first row Show all	>Lus10017662 pacid=23155508 polypeptide=Lus10017662 locus=Lus10017662.g ID=Lus10017662.BGIv1.0 annot-version=v1.0 MSTMVLTFWGSSTEKDSRMGYLAYLNISCFSVAHGVLHGNLLPILAADSTCIIKFSDVYEVLQVLVRIGIPIDIFNASTTQAIRYQLLQAPPSVINFAGD LKYVVDHKAAKENTTSTDDLKEQLSNRHVWMAASIHRGEEQCNYSRFPKLLSFCYLHLKECPLSQSLLLLGELRHLYSPTPIAVIGGSFYPDSAGHNISE AAVAGCAVLTAQLLSGVHVGHFAHMINQMQRLDPSSIVQVSGKVELEEALVNLFSDAKILEARRRALKQAFDALSSGVISNVWNLVNTHVLGRHCHGRRI R

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017662 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015815 [exp]	3.2	0.6828
AT1G24440			RING/U-box superfamily protein...		Lus10006448 [exp]	13.0	0.6927
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	17.0	0.6930
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10003459 [exp]	24.7	0.6972
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10025030 [exp]	26.8	0.5909
					Lus10023751 [exp]	32.7	0.6803
AT5G20690			Leucine-rich repeat protein ki...		Lus10005175 [exp]	33.5	0.6460
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	45.1	0.6667
					Lus10028940 [exp]	51.4	0.6558
					Lus10033100 [exp]	66.2	0.6462

Compare expression of checked genes

Lus10017662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.