Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06240 417 / 5e-145 Protein of unknown function DUF455 (.1) AT5G04520 130 / 8e-35 Protein of unknown function DUF455 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033620 [exp] 330 / 9e-112 AT1G06240 303 / 2e-101 Protein of unknown function DUF455 (.1) Lus10028831 [exp] 122 / 1e-31 AT5G04520 475 / 6e-171 Protein of unknown function DUF455 (.1) Lus10017450 [exp] 105 / 7e-26 AT5G04520 351 / 6e-123 Protein of unknown function DUF455 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090600 [exp] 494 / 2e-175 AT1G06240 436 / 1e-152 Protein of unknown function DUF455 (.1) Potri.010G233000 [exp] 122 / 1e-31 AT5G04520 491 / 5e-177 Protein of unknown function DUF455 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF04305 [flax] [poplar] DUF455 Protein of unknown function (DUF455)
Representative CDS sequence Show only first row Show all	>Lus10017666 pacid=23155539 polypeptide=Lus10017666 locus=Lus10017666.g ID=Lus10017666.BGIv1.0 annot-version=v1.0 ATGCTGGTCTTCAAGACACTCGCAGGAAAAGCAATGCTCTCCTCTTCTTCTTCTTCACTTGTACTCACAAACCGATTCCTCACGCGCCTTATCCCACGCG CCACCATCCTTTCTTCTCCCTTCTCCACCGCCGATTACTCCCCATGGTCAGGTCTCCAGTCATGGCGACAATCTCCCCTCAACGAGGACCGTTTCTGGGG ACCCACCGGTCCTCACCCTCCTCCCTCCTCCACCACCACCACTCCATCTCCAACCCTCGCGGCCGCATCCTCCCTCGCCGAGCTCGGCGCAATAGTCCTC TCAACCGCTGACCCACTCACCAAATCTGACCTCTCCCACCGCGCCTTCTCACGGTGGCTTAATGAATCGGAAGCCCTTCCTATCGGACAATGCCATATAA CCCCACCGGACCGCCCGGCTCGTCCTCCTCTGCCGCAGCTGGTCTCTCCCCGGGAGATTCCAGCTCCTAAAGATTCCGGATTGCCTCTGAATGCTTACAT GCTCCACAATCTAGCCCACGTGGAGCTCAACGCTATCGATTTGGCGTGGGACACTGTGGTCCGGTTTTCTCCCTTTGCTGATGTTCTTGGCCAAGGCTTC TTTGCTGACTTTGCTAAGGTTGCTGATGATGAGAGCCGCCATTTTGCTTGGTGCTCTCAGCGCCTCGCTGAGCTCGGTTACAAATATGGGGATATGCCTG CTCATAATCTGCTGTGGAGGGAGTGTGAGAAATCGGCTGATGATGTTGCTGCTCGGCTTGCTGTTATCCCACTTGTTCAGGAGGCTAGAGGGCTTGATGC TGGGCCGAGGCTGGTGCAGAAATTGATCGGTTTCGGGGACAACCAGACATCAAAGATTGTGGCTAGAATCGCGGAAGAGGAAGTCGCACATGTAGCTGTC GGGGTTTACTGGTTTGTTTCAGTTTGCCAGAAAATGAACCGTGCCCCTTGCTCCACTTTTAAAGAGCTGTTGAAAGAGTATAATGTAGAACTGAAAGGGC CTTTTAACCATTCAGCTAGAGAGGAAGCCGGGATCCCCCGTGACTGGTACGATGCTTCATTCGCAAGTAAGAAAGACCAAAGTGGGAACCAGAATCCTGA TGAAAAACTCTCTGTGGTTTACGAGCGTCTTGCTTCCATCGTAGCCATGGAATGCCAGAATGCAAACATGGATAGCAATCAGTGGCGATAG
AA sequence Show only first row Show all	>Lus10017666 pacid=23155539 polypeptide=Lus10017666 locus=Lus10017666.g ID=Lus10017666.BGIv1.0 annot-version=v1.0 MLVFKTLAGKAMLSSSSSSLVLTNRFLTRLIPRATILSSPFSTADYSPWSGLQSWRQSPLNEDRFWGPTGPHPPPSSTTTTPSPTLAAASSLAELGAIVL STADPLTKSDLSHRAFSRWLNESEALPIGQCHITPPDRPARPPLPQLVSPREIPAPKDSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFADVLGQGF FADFAKVADDESRHFAWCSQRLAELGYKYGDMPAHNLLWRECEKSADDVAARLAVIPLVQEARGLDAGPRLVQKLIGFGDNQTSKIVARIAEEEVAHVAV GVYWFVSVCQKMNRAPCSTFKELLKEYNVELKGPFNHSAREEAGIPRDWYDASFASKKDQSGNQNPDEKLSVVYERLASIVAMECQNANMDSNQWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06240			Protein of unknown function DU...		Lus10017666 [exp]	0	1
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10021200 [exp]	5.4	0.7542
AT3G01180		ATSS2	starch synthase 2 (.1)		Lus10015371 [exp]	16.7	0.6827
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10026959 [exp]	21.2	0.6621
AT5G16600	MYB	ATMYB43	myb domain protein 43 (.1)		Lus10010974 [exp]	27.5	0.7119
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Lus10013422 [exp]	29.3	0.6944
AT3G15095		HCF243	high chlorophyll fluorescence ...		Lus10017938 [exp]	32.5	0.6432
					Lus10020274 [exp]	33.5	0.6937
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10009146 [exp]	35.9	0.6562
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10016357 [exp]	42.8	0.6938
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	43.7	0.6614

Compare expression of checked genes

Lus10017666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.