Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18550 421 / 8e-146 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 403 / 7e-139 alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 402 / 2e-138 alpha/beta-Hydrolases superfamily protein (.1) AT2G42690 300 / 7e-99 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 270 / 2e-85 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 264 / 2e-83 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 260 / 7e-82 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G51440 253 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 183 / 9e-53 alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 179 / 2e-52 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033619 [exp] 446 / 9e-159 AT4G18550 235 / 1e-75 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 396 / 6e-137 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013936 [exp] 345 / 1e-116 AT4G18550 345 / 2e-116 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 340 / 1e-115 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013935 [exp] 331 / 4e-111 AT4G18550 337 / 2e-113 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017975 [exp] 297 / 1e-97 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041967 [exp] 265 / 4e-85 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 250 / 6e-79 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 241 / 1e-75 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G054800 [exp] 452 / 2e-158 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 452 / 2e-158 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 335 / 1e-112 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026500 [exp] 332 / 2e-111 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026400 [exp] 315 / 1e-104 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G101800 [exp] 305 / 1e-100 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 272 / 1e-86 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G218500 [exp] 270 / 9e-86 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G051900 [exp] 262 / 9e-83 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 250 / 4e-78 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10017668 pacid=23155500 polypeptide=Lus10017668 locus=Lus10017668.g ID=Lus10017668.BGIv1.0 annot-version=v1.0 ATGGCAACAGGGGACATAGCCAAGAGATGGAAGGAGCTAAGCGGAGAAGGTAACTGGAAGAACCTCCTCGACCCGATTGACAACGACCTCCGCCGCTACG CCATCCACTACGGCGAGATGGCTCAGTCCACCCTCGACGCTTTCAACGCCGACCAGTTCTCCAAGTTCGCCGGTGACTGCCGCTACCCCATGCTAACCTA CTTCGACAAGGTGGGATTAACCATTTGCAACCCATTCAAGTACCAAATCACAAAGTACTTGTACGCCACGTCAAAAATCCCTCTTCCAGATTGCTTCATT ATCAAGTCACTGTGCGATGAAGCATGGGACAAGCAATCCAACTGGATGGGATTCGTGGCAGTCGCTACCGACGAAGGCAAAGCTGCATTAGGTCGGAGGG ACATCCTGATCGCTTGGAGAGGCACGGTCCAGGCACTCGAACTGATCGAAGATTTCGATCACCCTCTGGTCCCTGGTACCGATGTATTCGGCCAAGGTTC CAAGCCCTTGGTTCATAGAGGCTGGCTCTCTGTCTACACCTCCGATAACCCCGATTCGGCCTTCAACAAAACCAGCGCCAGGGATCAGGTTCTCGAGGAA GTGGAAGCCCTAGTGAAGCAGTACAAGGACGAGGAGATCAGCATCACAGTAACAGGACACAGCCTAGGCGGAGCTCTAGCAACTCTCAACGCAGCAGACA TCGTAACCAACTGCTACAACGATCGTAACAAAGGATCAAAACACCCGGCCAATCCATGTCCGGTCACAGTATTCACCTACGGGTGCCCTCGAGTCGGAGA CATCTGTTTCAAGGACACATTCTGCTCCCTGAAGAATCTGTATCTGCTACGAGTCAGGAACGCGCCAGATATCGTCACGATCTACCCGCTAGTGGGGTAC GTGGATGTAGGAGTGGAATTCGATATCGACACCTTGAGATCGGAGCACCTGAGGTTTCCTTCGGGGTTTCTGGTGTTTCATAACTTGGAGGTTTACTTGC ACGGTGTTGCTGGAATGCAAGGGTGCAAACAAGGCGGGGGGTTTCGACTTGAAGTTGTGAGGGACCTTGCGTTGGTTAACAAGAGGACTAATGCTCTCAA GTTGCAGTATCTGATTCCTGCTGACTGGTGGTGCTTGAGGCATAAAGGTATGGTTCAACAGAACGATGGAACGTGGAAGCTCGAGGGTCGCGAGGAAGCA CGAACGAACGAATGA
AA sequence Show only first row Show all	>Lus10017668 pacid=23155500 polypeptide=Lus10017668 locus=Lus10017668.g ID=Lus10017668.BGIv1.0 annot-version=v1.0 MATGDIAKRWKELSGEGNWKNLLDPIDNDLRRYAIHYGEMAQSTLDAFNADQFSKFAGDCRYPMLTYFDKVGLTICNPFKYQITKYLYATSKIPLPDCFI IKSLCDEAWDKQSNWMGFVAVATDEGKAALGRRDILIAWRGTVQALELIEDFDHPLVPGTDVFGQGSKPLVHRGWLSVYTSDNPDSAFNKTSARDQVLEE VEALVKQYKDEEISITVTGHSLGGALATLNAADIVTNCYNDRNKGSKHPANPCPVTVFTYGCPRVGDICFKDTFCSLKNLYLLRVRNAPDIVTIYPLVGY VDVGVEFDIDTLRSEHLRFPSGFLVFHNLEVYLHGVAGMQGCKQGGGFRLEVVRDLALVNKRTNALKLQYLIPADWWCLRHKGMVQQNDGTWKLEGREEA RTNE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	0	1
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	1.4	0.9193
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10035312 [exp]	2.6	0.8996
AT3G21460			Glutaredoxin family protein (....		Lus10012815 [exp]	2.8	0.9148
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	4.2	0.9120
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	6.0	0.9109
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	7.4	0.9041
					Lus10041616 [exp]	8.9	0.8992
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	9.1	0.8245
					Lus10029851 [exp]	9.3	0.8450
AT2G20160		MEO, ASK17	MEIDOS, ARABIDOPSIS SKP1-LIKE ...		Lus10004140 [exp]	9.9	0.8099

Compare expression of checked genes

Lus10017668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.