Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49010 259 / 3e-88 EMB2812, SLD5 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033618 [exp] 443 / 1e-160 AT5G49010 254 / 5e-86 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103800 [exp] 376 / 2e-134 AT5G49010 277 / 2e-95 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2) Potri.010G147050 [exp] 228 / 2e-76 AT5G49010 162 / 2e-50 SYNTHETIC LETHALITY WITH DPB11-1 5, EMBRYO DEFECTIVE 2812, DNA replication protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05916 [flax] [poplar] Sld5 GINS complex protein
Representative CDS sequence Show only first row Show all	>Lus10017669 pacid=23155575 polypeptide=Lus10017669 locus=Lus10017669.g ID=Lus10017669.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTGCCTCCACCCAGGATTTAGGGTCGGCGGCCTTCGTCGACGATTACGAGACGTTGATATCCACCACAGACGTAGAGCTATTGAAGTGCG CATGGCGAAATGAGAAAGCTGCGCCGGAGATTCTTTCTTACGAAGCTGCTTTGGTTCACAGGATCAAAGAGCAAATTGATTTGGCGGAGCAAAATGTGGA GGTTTCTGAAGGAAATGGGGAAGATCGCCTCACTATATCCCTTTACCAGATGGATTTGGACAGGACTCAGTTTCTGCTGCGATCGTATCTCCGAGTCCGC CTCCAGAAGATTGAGAAGCATCTCTTCCACATTTTGAAGACTGATGAGTCCTTTAACCGACTTTCTAAGCTGGAGCAAGCTTTTGCTAAGAGGTGCACAG ACGATCTGGGAGCTCATCTTAAAGAGACGGTTCTGTCAAAATTGCCAGATAATTACCAGTCTGAGCTAAAACAATCTATCACCAGCGAAGAGGATGACAT GGTACCAGCACCGCGACTGGATTCGTTCGTGATCTGCAAAGCAAAGGAGTATCTTTCTGGACTCGACTTCGACCCCGAATACAGTACGGAGATTACAGAG ATGGAGAAAGATTTGCTTACCTTTGTTTGCTACAAGTTCATCAAGAAGCCTTTCGAGAACGGCAAGATCGATCTAGTTTGA
AA sequence Show only first row Show all	>Lus10017669 pacid=23155575 polypeptide=Lus10017669 locus=Lus10017669.g ID=Lus10017669.BGIv1.0 annot-version=v1.0 MAASASTQDLGSAAFVDDYETLISTTDVELLKCAWRNEKAAPEILSYEAALVHRIKEQIDLAEQNVEVSEGNGEDRLTISLYQMDLDRTQFLLRSYLRVR LQKIEKHLFHILKTDESFNRLSKLEQAFAKRCTDDLGAHLKETVLSKLPDNYQSELKQSITSEEDDMVPAPRLDSFVICKAKEYLSGLDFDPEYSTEITE MEKDLLTFVCYKFIKKPFENGKIDLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49010		EMB2812, SLD5	SYNTHETIC LETHALITY WITH DPB11...		Lus10017669 [exp]	0	1
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10002253 [exp]	3.9	0.9425
AT3G29300			unknown protein		Lus10034904 [exp]	4.7	0.9530
AT5G40030			Protein kinase superfamily pro...		Lus10032185 [exp]	4.7	0.9438
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10009538 [exp]	10.2	0.8961
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	12.0	0.9389
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	12.8	0.9215
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10008662 [exp]	14.5	0.8452
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	15.0	0.9284
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	15.3	0.9339
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	16.0	0.9292

Compare expression of checked genes

Lus10017669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.