Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42570 192 / 1e-60 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT1G29050 180 / 5e-56 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G31110 174 / 1e-55 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G78710 169 / 1e-52 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT3G14850 145 / 6e-44 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G34070 140 / 2e-40 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT5G58600 117 / 1e-31 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06700 104 / 2e-26 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G54260 100 / 3e-25 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1) AT2G30010 97 / 4e-24 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033617 [exp] 284 / 9e-97 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10002198 [exp] 221 / 3e-72 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10000466 [exp] 207 / 1e-68 AT2G31110 291 / 4e-101 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10000988 [exp] 169 / 1e-51 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 169 / 2e-51 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 162 / 6e-49 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10020786 [exp] 138 / 1e-40 AT2G30900 298 / 1e-100 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Lus10009209 [exp] 125 / 5e-35 AT3G14850 423 / 2e-148 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Lus10004159 [exp] 117 / 4e-31 AT5G06700 552 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G118500 [exp] 225 / 2e-73 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.019G090200 [exp] 221 / 6e-72 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.004G055000 [exp] 179 / 7e-56 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106200 [exp] 163 / 2e-49 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G064700 [exp] 156 / 1e-46 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201600 [exp] 142 / 2e-41 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G135600 [exp] 142 / 2e-41 AT2G30900 416 / 1e-145 TRICHOME BIREFRINGENCE-LIKE 43 (.1) Potri.003G201700 [exp] 140 / 8e-41 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.001G023900 [exp] 135 / 1e-38 AT1G29050 383 / 3e-132 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 133 / 4e-38 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10017670 pacid=23155463 polypeptide=Lus10017670 locus=Lus10017670.g ID=Lus10017670.BGIv1.0 annot-version=v1.0 ATGATTACTAATCAAAGGCTAGATGCAGAGCTAATTATGTGGGATTATGGAGTGAAGATATTACTGTACAGAACACCATATTTGGTGGATCTGGTCAACG ACAAGAGGTCAGGCAACAGGATTCTTAAACTTGACTCCATCGCCTACGGCAGATCCTGGCGTGGTATGGACGTCTTGATCTTCAACTCTTGGCACTGGTG GACTCACTCCGGCAGATCTCAGCCTGGCAGTGACTGGAACCAGCCGTCACAGACATGTTCAGGCCAGACGCAGCCCTTCATCGGAACAAGGTATCCAGCC GGGACACCTCCGGCATGGGCGGTGGTTAACAAGGTTATGAGGAGGATGAAGAAGCCGGTTTACCTTCTCGACATCACCGGCATGTCTCTCTATCGAAAGG ATGCTCATCCGGGCTCGTACAGTCGAAACGGAGCCACTGATTGTAGCCATTGGTGCCTCCCTGGACTCCCTGATACTTGGAACATACTGCTCTACTCAGC TTACGTTAGTTAA
AA sequence Show only first row Show all	>Lus10017670 pacid=23155463 polypeptide=Lus10017670 locus=Lus10017670.g ID=Lus10017670.BGIv1.0 annot-version=v1.0 MITNQRLDAELIMWDYGVKILLYRTPYLVDLVNDKRSGNRILKLDSIAYGRSWRGMDVLIFNSWHWWTHSGRSQPGSDWNQPSQTCSGQTQPFIGTRYPA GTPPAWAVVNKVMRRMKKPVYLLDITGMSLYRKDAHPGSYSRNGATDCSHWCLPGLPDTWNILLYSAYVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10017670 [exp]	0	1
AT1G50920			Nucleolar GTP-binding protein ...		Lus10038748 [exp]	1.4	0.8289
AT5G39380			Plant calmodulin-binding prote...		Lus10030701 [exp]	2.8	0.8188
AT1G50920			Nucleolar GTP-binding protein ...		Lus10039110 [exp]	8.0	0.7815
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10022517 [exp]	13.6	0.8046
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	17.2	0.8186
AT1G05170			Galactosyltransferase family p...		Lus10031567 [exp]	18.4	0.7811
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	19.8	0.7946
AT3G17350			unknown protein		Lus10043098 [exp]	21.6	0.7634
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	21.6	0.8029
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	22.4	0.7928

Compare expression of checked genes

Lus10017670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.