Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62390 265 / 3e-84 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G06700 258 / 6e-80 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 256 / 1e-79 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT3G54260 250 / 2e-79 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1) AT5G20590 249 / 1e-77 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT1G78710 241 / 2e-76 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G01360 243 / 5e-76 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G49340 242 / 2e-75 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1) AT2G30900 238 / 6e-75 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G60790 237 / 1e-72 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011932 [exp] 263 / 3e-83 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 262 / 9e-83 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10021066 [exp] 260 / 2e-80 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Lus10013035 [exp] 254 / 9e-79 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Lus10002430 [exp] 250 / 7e-78 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10030396 [exp] 241 / 7e-75 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 239 / 3e-74 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 239 / 4e-74 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10037726 [exp] 238 / 7e-74 AT5G49340 435 / 3e-150 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G090000 [exp] 407 / 4e-140 AT3G12060 290 / 3e-92 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 271 / 6e-85 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 267 / 5e-83 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.002G195800 [exp] 254 / 7e-79 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.004G055000 [exp] 248 / 1e-78 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.008G020900 [exp] 246 / 1e-77 AT3G54260 495 / 1e-175 TRICHOME BIREFRINGENCE-LIKE 36 (.1) Potri.T171301 [exp] 248 / 2e-77 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.008G108500 [exp] 248 / 2e-77 AT5G49340 460 / 7e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1) Potri.010G187500 [exp] 244 / 1e-76 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 247 / 2e-76 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10017671 pacid=23155534 polypeptide=Lus10017671 locus=Lus10017671.g ID=Lus10017671.BGIv1.0 annot-version=v1.0 ATGTCCAGCAACAATAATTCATCCACCATGATCAACACCTGGATTCTCTGCACATTTGCATTCTTCCTTGCATGCTATCTGGTTCTCATCTACCTCGACT GGAACGGCTACAACAGCTTAGCCATCGTTACGACAACTTTCCCATCTCTCATCGAACCCTCGAACCCATCCGGAGGAGTTAAGGAATGCAGTGTGTTTGA TGATGCTGGAGGAAGATGGGTTTATGACCCGATCGGAAACCCTGCTTACAAAGGGGAGCAATGCCCCTTTCTTGGGGAGCAAGTAAGCTGCCAGGGGAAT GGAAGGCCTGATTCTAAGTATGAGAAATGGACTTGGGAACCTGAGGGATGCAACCTTCCAAGGTTCAATGCAACAAACATGCTGGAAATGCTAAAAGGGA AGAGGGTGGCTATAGTTGGAGACTCAATCAACAGTAACCAATGGGAGTCTCTAGCATGTCTTCTCTACATTGCTCTACCTCCCACCCGATCCCATGTTGA TGTTCGTCGTAGCGACTACAAGGTCTTCGTGTCTCCGGTTAGATCCCCTAGCTTCAGCTTCTCTCTGCTGCAGATTGATCACAATTGCTCTGTGGAGTTC TTGTGGAGTCCTTTTTTGGTACAACTGGACATGAAGGAAGAGCAAGGTGACAGTAGTAGTAGTAATGGAAACAGAATTCTGAGGCTTGACAGGATTTCTG ACTCAGCTTCCACGTGGGCTGGTGCTGACGTCATGGTGTTCAACTCTGGCCAAGGGTGGCTTCATGGTGGCAAGTTAAAAGGGTGGGATTCGTTTGAATA CAAAGGACAGTTGGTAGAACAGATGGAGATCAAGTCAGCATTCCAGGAGGCCATGACAACTTGGGCTAAGTGGATTGATCAAAATGTAGACTCAACCAAA ACAAGCATATACTTTCGAAGCATATCGCCCGAGCATATAGGGAATCAAGAGTGCTCCCATTCGAAAGAACCGATCAAGGACAACAAAGAATCCCTCGAAC CCAGTTTCCCTCCTGAGATGACTGATATCGTTACAGAAACAATTAAAGGGATGACGACACAAGTAAGGTACCTCAAAATCACACAGATGTCCCGGTACAG AATAGATGCACATCCTGCAGTCTATGCTCATAAGGAGGACGAGGATTCGATCAGAAAACTGGAATCGCTGCCACGTTTCCGCCCTGATTGCAGCCATTGG TGTTTGCCTGGAGTTCCTGATACGTGGAACAGGCTACTCTATGCATCTATGCTCTTGGACAGTTGA
AA sequence Show only first row Show all	>Lus10017671 pacid=23155534 polypeptide=Lus10017671 locus=Lus10017671.g ID=Lus10017671.BGIv1.0 annot-version=v1.0 MSSNNNSSTMINTWILCTFAFFLACYLVLIYLDWNGYNSLAIVTTTFPSLIEPSNPSGGVKECSVFDDAGGRWVYDPIGNPAYKGEQCPFLGEQVSCQGN GRPDSKYEKWTWEPEGCNLPRFNATNMLEMLKGKRVAIVGDSINSNQWESLACLLYIALPPTRSHVDVRRSDYKVFVSPVRSPSFSFSLLQIDHNCSVEF LWSPFLVQLDMKEEQGDSSSSNGNRILRLDRISDSASTWAGADVMVFNSGQGWLHGGKLKGWDSFEYKGQLVEQMEIKSAFQEAMTTWAKWIDQNVDSTK TSIYFRSISPEHIGNQECSHSKEPIKDNKESLEPSFPPEMTDIVTETIKGMTTQVRYLKITQMSRYRIDAHPAVYAHKEDEDSIRKLESLPRFRPDCSHW CLPGVPDTWNRLLYASMLLDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10017671 [exp]	0	1
AT1G66930			Protein kinase superfamily pro...		Lus10022367 [exp]	3.6	0.8360
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10021868 [exp]	8.1	0.7399
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019829 [exp]	16.9	0.7613
AT5G19950			Domain of unknown function (DU...		Lus10000162 [exp]	16.9	0.7553
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10039946 [exp]	21.0	0.6978
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	29.1	0.7486
AT4G27870			Vacuolar iron transporter (VIT...		Lus10035731 [exp]	29.8	0.7411
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030606 [exp]	31.0	0.7317
AT5G62140			unknown protein		Lus10038887 [exp]	33.7	0.7501
AT4G17085			Putative membrane lipoprotein ...		Lus10029696 [exp]	38.5	0.7285

Compare expression of checked genes

Lus10017671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.