Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31130 99 / 7e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033615 [exp] 573 / 0 AT2G31130 101 / 2e-23 unknown protein Lus10013926 [exp] 66 / 5e-12 AT2G31130 68 / 1e-12 unknown protein Lus10000990 [exp] 66 / 1e-11 AT2G31130 70 / 3e-13 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089900 [exp] 142 / 2e-38 AT2G31130 84 / 1e-17 unknown protein Potri.013G118000 [exp] 121 / 1e-30 AT2G31130 85 / 8e-18 unknown protein Potri.001G376800 [exp] 77 / 4e-15 AT1G17780 82 / 3e-17 unknown protein Potri.011G065100 [exp] 56 / 1e-08 AT2G31130 63 / 8e-11 unknown protein Potri.004G055300 [exp] 56 / 2e-08 AT2G31130 66 / 5e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017672 pacid=23155568 polypeptide=Lus10017672 locus=Lus10017672.g ID=Lus10017672.BGIv1.0 annot-version=v1.0 ATGGACCTGAAAGGCATCACATGGGTTGGGGATGTCTATCAGAAGTTTGAAGCTATGTGTTTGGAAGTGGAAGAAACTATGTATGAGGACACAGTTAAAT ACGTGGAAAATCAGGTGCAGACGGTTGGCGCTAGCATGAAGAAGTTCTATGCAGAGGTGATGCAAGATTTGGTGCAGCCAGCCTCTGAAGATTCTGCAAA AGCAACGACCTTTGATCGGTCTGTGGAGCTGCACACTGATCTTGGGATATACTTGAACCCCAAATTGACGGTGAAGGAAAACCGTCTAAAGATTCATAAT AATAAGGAACAATTGAGCGAGTCTCGGAAAACTGCCGGTGCGAAAAGTTCAGACCTTTCGTCCGCCTTCCTTTGTCATGTGGATAATCTGTTTCCCCTTG TGCAAGAAAACTTGGCCAAAGGTGTGCTAGAGAAATATACTAAAGGAAGCCTGTCAAAGAAGTCGAGCTTGGGAATCGGCAAGGTGCCGTTGTTAGCCTC TCCTCTAACTAAAACGCGAGAAGTATCGTTTGATCAGCAAGCTAGACTTGCAACTTCAAGTTCTGGATGTATAGAAGAAAGCAAAACGGATAAAGTTGAC CCCAAAGCATCGGTGCCTGCTTGTTCAAATGCTGATGCGTTGTCTAATAAAGCCATACCCCTTGAGTCAGGGAGTTTCGAGCAAGTGGATGCAGGACATC CTTGCTCTAACAATTCTTTAGCAGAATCGAATAGCAGCCATGTTTCCGAGGATGGATCCTCGGCAAAAGCAAGTGAACTTTCTGGGAAATTTGCTTATAC TGAGGACTACACTTCTACCTCAGATAACTGTTGCCCCGATCAGGAGCGAGAAACTGACCATGCAATGATTGGAGATGGTACTGTAGATCAACAATTGGTG AGTGATCAGCAGCAAGCTGACCAGGTCTTGCTCGAGGAATCATGCATTGTCGTCAGCGAAGATGATGAGTTCGATTTCGTTTCTCACCGTGAAGGAAAAA GTTCTAAATGCAAGAATATATTTAAGGATGTTTTTTCGCCACGAAGAAGGTCATCAAGGAAGCAGAGAAGTTCAGCATCAGCTTTAACTGGAGCAGGAGT TGCAAAGCTCGAATCTTGCGATCCCGAGTGGGAGCTGGTTTAG
AA sequence Show only first row Show all	>Lus10017672 pacid=23155568 polypeptide=Lus10017672 locus=Lus10017672.g ID=Lus10017672.BGIv1.0 annot-version=v1.0 MDLKGITWVGDVYQKFEAMCLEVEETMYEDTVKYVENQVQTVGASMKKFYAEVMQDLVQPASEDSAKATTFDRSVELHTDLGIYLNPKLTVKENRLKIHN NKEQLSESRKTAGAKSSDLSSAFLCHVDNLFPLVQENLAKGVLEKYTKGSLSKKSSLGIGKVPLLASPLTKTREVSFDQQARLATSSSGCIEESKTDKVD PKASVPACSNADALSNKAIPLESGSFEQVDAGHPCSNNSLAESNSSHVSEDGSSAKASELSGKFAYTEDYTSTSDNCCPDQERETDHAMIGDGTVDQQLV SDQQQADQVLLEESCIVVSEDDEFDFVSHREGKSSKCKNIFKDVFSPRRRSSRKQRSSASALTGAGVAKLESCDPEWELV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31130			unknown protein		Lus10017672 [exp]	0	1
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	2.2	0.9374
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	2.2	0.9437
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	3.2	0.9410
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10008285 [exp]	3.5	0.9388
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	5.9	0.9339
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	6.3	0.9377
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	8.5	0.9333
AT3G23270			Regulator of chromosome conden...		Lus10035397 [exp]	8.8	0.9086
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10024558 [exp]	10.2	0.9198
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	11.6	0.9315

Compare expression of checked genes

Lus10017672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.