Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23360 45 / 3e-05 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033614 [exp] 681 / 0 AT1G23360 48 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10013038 [exp] 48 / 4e-06 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 48 / 5e-06 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089700 [exp] 481 / 4e-171 AT3G18000 53 / 2e-07 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G188600 [exp] 47 / 8e-06 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G263700 [exp] 42 / 0.0004 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10017673 pacid=23155532 polypeptide=Lus10017673 locus=Lus10017673.g ID=Lus10017673.BGIv1.0 annot-version=v1.0 ATGGCGTTTTCTTCCCAACCCCACAATTACCTCTCTACCCTCCTCCCCTCCACCTCCAATGGAGCAGGAACAAGAAGAAGAAGAGCATCCGGGTCAGTTT CCGTTCATTCTAAGATGGCAAATCCAACGAAAACTGCAGAGTACGAAGAAGGGAAGCTGGAGATGCCGAAATGGGCAGGTGAGACTCCTCTGTCTCGCCT GGTTGGGGCCATGGTTTCATTCAAGCCTCTCTACTCCCTCCTCAAGCTCGGAGCTCGTCAGGTCCTCATCAGCACTGCTGAGAAGAGGAACATTCAATGG CGAGAGATGACCAGGAAAATTCTCGAATCCGATGTTTACAAGGAGATGGACTCAATCCTCAACCCCTCCCTCCAATACCCAGATTATTACTTAAGCCCTT TCCATGCATATGATGAAGGAAACCTTTCATGGCTGGCTGCAGCAGAAGCTGAACCAGCAACAATGTCTATGGTGTTTCGAGCAGTACCGACTGCTTCATC CGTGGAGGAAGCCAACGAGATCGTCCGAGGGAACTGGCTTCGAGCTATCGAACAGCAGCATCAGCAGTACTCGGGCCGGGGTTCTTCGAGTATTTGCGAC ATTCTGGATGTTGGATGCTCAGTAGGTGTTAGCACCAGGTTTCTTGCTGATAAGTTCCCTTCTGCAAATGTCACTGGTCTGGATCTGTCACCTTACTTCC TTGCTGTAGCACAATTCAAGGAGAAGAAGAGCAAAACCCCAAGGAAGAACATAGTTGGATGGATCCATGCCAATGGGGAGAATACCGGCTTGCCTAACGA ATCATTCGATGTCGTCTCGATTTCTCTTGTGTTTCATGAATGTCCCGAACGAGCGATAGTTGCGATGGTGAATGAAGCATTCAGGCTACTTCGGCCCGGA GGAACCATTGCACTGATGGATCAAGCAGAACTGTCTCCAGTACTGTTTACACTGTTGAAGAGCACAGAGCCATATCTGGATGAGTTCTACCTGACTGACC TGAATGGGGCTCTCAAGGAAGCTGGATTCGTCAACATTCAGACTGTTCTAAGTGACTCCAGACATATGACTAAGACTGCAACCGTGCCACCTCGTTAG
AA sequence Show only first row Show all	>Lus10017673 pacid=23155532 polypeptide=Lus10017673 locus=Lus10017673.g ID=Lus10017673.BGIv1.0 annot-version=v1.0 MAFSSQPHNYLSTLLPSTSNGAGTRRRRASGSVSVHSKMANPTKTAEYEEGKLEMPKWAGETPLSRLVGAMVSFKPLYSLLKLGARQVLISTAEKRNIQW REMTRKILESDVYKEMDSILNPSLQYPDYYLSPFHAYDEGNLSWLAAAEAEPATMSMVFRAVPTASSVEEANEIVRGNWLRAIEQQHQQYSGRGSSSICD ILDVGCSVGVSTRFLADKFPSANVTGLDLSPYFLAVAQFKEKKSKTPRKNIVGWIHANGENTGLPNESFDVVSISLVFHECPERAIVAMVNEAFRLLRPG GTIALMDQAELSPVLFTLLKSTEPYLDEFYLTDLNGALKEAGFVNIQTVLSDSRHMTKTATVPPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	0	1
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	2.0	0.9472
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	2.4	0.9123
AT2G33700			Protein phosphatase 2C family ...		Lus10016030 [exp]	3.9	0.8839
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10028226 [exp]	4.2	0.9019
AT5G21222			protein kinase family protein ...		Lus10023650 [exp]	4.7	0.9183
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10036913 [exp]	6.0	0.9055
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10037766 [exp]	6.6	0.8951
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10016906 [exp]	7.7	0.8959
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10031000 [exp]	14.7	0.9015
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	15.4	0.9017

Compare expression of checked genes

Lus10017673 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.