Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06260 291 / 5e-97 Cysteine proteinases superfamily protein (.1) AT3G48340 271 / 4e-89 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT1G47128 265 / 2e-85 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 265 / 2e-85 Granulin repeat cysteine protease family protein (.1) AT5G45890 259 / 1e-84 SAG12 senescence-associated gene 12 (.1) AT4G23520 256 / 2e-83 Cysteine proteinases superfamily protein (.1) AT4G35350 256 / 3e-83 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 253 / 3e-82 XCP2 xylem cysteine peptidase 2 (.1) AT5G50260 253 / 6e-82 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 255 / 1e-81 Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033631 [exp] 367 / 9e-129 AT3G48340 224 / 2e-72 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) Lus10002184 [exp] 362 / 3e-125 AT1G06260 384 / 1e-133 Cysteine proteinases superfamily protein (.1) Lus10039901 [exp] 328 / 3e-110 AT1G06260 346 / 4e-117 Cysteine proteinases superfamily protein (.1) Lus10028501 [exp] 282 / 1e-93 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 280 / 5e-93 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 280 / 7e-93 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020734 [exp] 278 / 4e-92 AT5G45890 390 / 4e-136 senescence-associated gene 12 (.1) Lus10003275 [exp] 278 / 7e-92 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10029799 [exp] 277 / 9e-92 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076000 [exp] 275 / 4e-91 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 275 / 1e-90 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 275 / 1e-90 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 271 / 3e-89 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 270 / 4e-89 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 270 / 6e-89 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.011G064900 [exp] 268 / 5e-88 AT5G45890 401 / 3e-140 senescence-associated gene 12 (.1) Potri.014G024100 [exp] 267 / 3e-86 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 265 / 4e-85 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.013G126100 [exp] 259 / 8e-85 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10017674 pacid=23155448 polypeptide=Lus10017674 locus=Lus10017674.g ID=Lus10017674.BGIv1.0 annot-version=v1.0 ATGGAGAGAGCACTAGTGTTGAGAATGGTTACCTACGTTCTGATAGCTGTGACTAGCATTCTTTCTGTGCTTCTTTCGACTGCTGCTGCTGCACCCACAC ACATGGAGGAGAGGTTTAACAAATGGATGGCGAAACACAACAGGACATACAAGAGTGGAGACGAGTATTTCAGTCGTTTCCAGATATACCAATCGAATCT TCGTCTCATTGAGCATATCAATTCTCTTAATCTGTCATACCAACTGACTGATAGCAAGTTTGCTGACTTGACTCATGAGGAGTTCAAATCAACGTACCTT CGACTGTTACCTAAGCATTCCAGCAAGGATCAGAAGCATGCCAATTTCAGCTGCGATGATTTTCCGGAGAAGGTAGATTGGAGGAAGAAAGGTGCTGTCA CTGAGGTCAAAAATCAATTATGCGGAGATGGTTGGGCATTCTCGACAGTGGCAGCTGTCGAGAGCTTCCACAAAATCAAGACAGGAAAACTAACGACTCT TTCGGAACAAGAGCTCGTAGACTGTGTTGGTGGTGGTGACACCGACGGATGCAAAGGTGGGTTCATGTCGGATGCATACGACTTCATCACGGAGATTGGG GGACTAACGACTAGTGATAACTATCCTTACAAAGGCAGTGATGGAGTTTGCCAGAAACTGAAACATCCTTCTGCAAAAATTAATGGATATGAAGTATTAT TTACCGACAACGAGACGACCCTCCAAGCCTCTGTTGCAAAGCAGCCTGTCAGTGTTGCAATTGATGCTACTCATTTCCGATTATATTCCAAGGGTATCTT CATTGGACCCTGCAAATCGGACCTCAACCATGGAGTCGTAGCAGTTGGGTATGGAGCCGAACATGGTAAGAAGTACTGGATTCTGAAAAATTCATGGGGG AAAGAATGGGGAGAAGCTGGATACATCAGGTTGCCACGTGATGTGAAGGAGAAAGGTGGCAAGTGCGGCATTGCCATGGCAATCAGTTTCCCTGTCTAA
AA sequence Show only first row Show all	>Lus10017674 pacid=23155448 polypeptide=Lus10017674 locus=Lus10017674.g ID=Lus10017674.BGIv1.0 annot-version=v1.0 MERALVLRMVTYVLIAVTSILSVLLSTAAAAPTHMEERFNKWMAKHNRTYKSGDEYFSRFQIYQSNLRLIEHINSLNLSYQLTDSKFADLTHEEFKSTYL RLLPKHSSKDQKHANFSCDDFPEKVDWRKKGAVTEVKNQLCGDGWAFSTVAAVESFHKIKTGKLTTLSEQELVDCVGGGDTDGCKGGFMSDAYDFITEIG GLTTSDNYPYKGSDGVCQKLKHPSAKINGYEVLFTDNETTLQASVAKQPVSVAIDATHFRLYSKGIFIGPCKSDLNHGVVAVGYGAEHGKKYWILKNSWG KEWGEAGYIRLPRDVKEKGGKCGIAMAISFPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06260			Cysteine proteinases superfami...		Lus10017674 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012871 [exp]	6.3	0.8457
					Lus10004903 [exp]	6.6	0.7678
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	9.8	0.7634
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	9.9	0.7805
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10033289 [exp]	11.8	0.8020
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	13.9	0.7877
AT1G60010			unknown protein		Lus10010708 [exp]	14.2	0.8309
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030660 [exp]	15.9	0.7198
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	17.8	0.7395
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013100 [exp]	18.2	0.7336

Compare expression of checked genes

Lus10017674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.