Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06270 391 / 6e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 83 / 4e-17 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 69 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 67 / 7e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 67 / 8e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 66 / 1e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 66 / 2e-11 RPF2 rna processing factor 2 (.1) AT1G62910 66 / 2e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 66 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 65 / 3e-11 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033632 [exp] 601 / 0 AT1G06270 392 / 8e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 71 / 3e-13 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 71 / 3e-13 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019474 [exp] 67 / 9e-12 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014660 [exp] 67 / 1e-11 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10042307 [exp] 66 / 2e-11 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043322 [exp] 66 / 2e-11 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000554 [exp] 65 / 3e-11 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10038974 [exp] 63 / 1e-10 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124100 [exp] 389 / 2e-135 AT1G06270 360 / 2e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G379500 [exp] 72 / 1e-13 AT3G14580 442 / 2e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 71 / 3e-13 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 71 / 4e-13 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 69 / 1e-12 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 69 / 1e-12 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 68 / 4e-12 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G021200 [exp] 67 / 5e-12 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G248100 [exp] 66 / 7e-12 AT3G25210 506 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 67 / 8e-12 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017675 pacid=23155515 polypeptide=Lus10017675 locus=Lus10017675.g ID=Lus10017675.BGIv1.0 annot-version=v1.0 ATGAACCGAGTCAACCCTCTTCCGTCTACCCAATTCCAAATCCCTAGCTCTTTGCCGCCTAACACAAAATTGAACCCGCCGGAAAATTCCCAAATGAAGA AATCCCACCTCCGCCGCGCAATCTCCACTTCGTCGTCAACCCTGCAACAATCAATTCGATCCGCAATCGAATCCCGAACCTTTCAACAAATCCCAGACCT TCTCAGTTCATCCACCGTCCCATGGCACAATCCAAATCCTTTCTCCTTCCTCTCCACCACCCCACTCCACGTCACAACCAAGCTTATCGACGACGTCTTA CAGTCCTTCATCCCGCTCCGGCCACGAACTCGCGCCAAGATCGCTTACGACTGCCTCCTCGCCTACACTCTCCAGAGCTCTCACCCGCTCCCTCTATCTC TCGCGGTCCTCCAGCGTACACTCCGCTCCGGTTGCACGCCGTTCCCCCAGTCTCAGCTCTTCCTATCCTCCGCCTGGCTCGATCGCCGCCGGGGCAGGAT GATTCCGCTTCCTCACTCCGTCGCCGGGATTGTATCTGAGATGAAATCGATTGGGTACAGCCCTGATAGCGGGACGTGTAACTATCTGATTTCGTCTCTG TGTGCTGTTGATGAGTTAGCAGAGGCTGTGAATGTCTTGAAAGGTATGGTTAGAGCTGGTTGCGTTCCTGATTTGGAGAGCTATGGTTCCGTTATCAGTG CAATGTGTGTAGCTAGAAAAAGTGGCGACGCTTTGGAGCTTTTGAAGGAGATGGTTGTTGGGAATGGATTGACTCCACGGCAGGGGACTGTGAAGAGAGT TGCTGCGGCTTTGCGAGCGAATCGGGAGATACGGAATGCTGTTGAGCTGATTGAGTTCTTGGAGATGGAGAGCTATGCTGTTGGGTTTGAAGGTTATGAG GTGGTTCTTGAAGGGTGCTTGGAATGCAAAGAGTACATTTTGGGTGCAAAGATAGTTATGAGAATGACTGGGAAGGGGTTTATACCGTATATCAAGTTTA GGCAAAAGGTTGTCCAGGGATTGATTGATGCCGGACAGTGGCAATTGGCCTGTGCTGTGAGGCAAAGGTTTGCAGAACTGAGTTCTTAG
AA sequence Show only first row Show all	>Lus10017675 pacid=23155515 polypeptide=Lus10017675 locus=Lus10017675.g ID=Lus10017675.BGIv1.0 annot-version=v1.0 MNRVNPLPSTQFQIPSSLPPNTKLNPPENSQMKKSHLRRAISTSSSTLQQSIRSAIESRTFQQIPDLLSSSTVPWHNPNPFSFLSTTPLHVTTKLIDDVL QSFIPLRPRTRAKIAYDCLLAYTLQSSHPLPLSLAVLQRTLRSGCTPFPQSQLFLSSAWLDRRRGRMIPLPHSVAGIVSEMKSIGYSPDSGTCNYLISSL CAVDELAEAVNVLKGMVRAGCVPDLESYGSVISAMCVARKSGDALELLKEMVVGNGLTPRQGTVKRVAAALRANREIRNAVELIEFLEMESYAVGFEGYE VVLEGCLECKEYILGAKIVMRMTGKGFIPYIKFRQKVVQGLIDAGQWQLACAVRQRFAELSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06270			Pentatricopeptide repeat (PPR)...		Lus10017675 [exp]	0	1
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10017633 [exp]	1.4	0.8694
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	3.2	0.8295
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	7.2	0.8566
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	8.5	0.8427
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	8.5	0.8155
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	9.2	0.7987
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	9.8	0.8263
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	10.8	0.8354
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	12.6	0.8074
AT5G12190			RNA-binding (RRM/RBD/RNP motif...		Lus10026814 [exp]	14.3	0.7930

Compare expression of checked genes

Lus10017675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.