Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25180 349 / 4e-115 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT1G13080 348 / 1e-114 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT5G25140 346 / 5e-114 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT3G26300 341 / 5e-112 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 338 / 7e-111 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G25120 335 / 9e-110 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26320 335 / 2e-109 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26270 334 / 3e-109 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT5G25130 333 / 7e-109 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G26210 329 / 2e-107 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033633 [exp] 964 / 0 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10017677 [exp] 866 / 0 AT3G26300 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10033634 [exp] 815 / 0 AT5G25180 363 / 1e-120 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10024331 [exp] 710 / 0 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10029035 [exp] 484 / 1e-167 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 459 / 8e-158 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034230 [exp] 458 / 2e-157 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 449 / 5e-154 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10030924 [exp] 447 / 5e-153 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 459 / 1e-157 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 449 / 3e-154 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 447 / 2e-153 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.007G075000 [exp] 438 / 1e-149 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 437 / 1e-149 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 437 / 2e-149 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 434 / 4e-148 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 434 / 4e-148 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 432 / 3e-147 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G028000 [exp] 410 / 1e-138 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017676 pacid=23155576 polypeptide=Lus10017676 locus=Lus10017676.g ID=Lus10017676.BGIv1.0 annot-version=v1.0 ATGGATCACCTTCTTCAGATCCCACTCTTGCTGGTAATCACCTTCGCAACCATCTCCTTCATCTCGTTCGTCACCAAGAACCTATCGAAATCCTACACCT CGAAGAATGTTGATGATAAGAACATCAAGTACTTGCCTCCATCTCCATGGAAGCTTCCGATGATCGGACACATCCACCACTTCATGACGGCCCAGCCACC TCACCGTCGCCTCCGTGAGCTTTCCCAGAAGCACGGGGACGTCGTCAGCCTGGACCTCGGGGAGATGCCCCACGTAGTCATTTCATCTGCGGAGGCTGCG AAGCAGGTGATGCGGACCCACGACATCAACTTCGCTCAACGACCGTTCCACCCTCACCAGGCCAAGGTCATGTACGGAGGGATCAACCTAATCCACGCAC CCTATGGAGACTACTGGCGCCAGCTCCGTCGCATCGCCACACTCGAGCTGCTCACAGCCCGACGCGTGGAGTCTCTGCGCAGAGTCAGGGAGGCCGAGGT GCAGAGCCTCATAAAAGACATCTCCAACCATGCTGGTTCCACCATCGACCTTTCCATGAAGTTGTTCAACATGACCTATTCCATCATATCGAGGGCCACA TTCGGGGACGTTTCAGGGGAGCAGGAGGAATTCATACAGATCGCGGAGGAGATGGTGAAGTACGGTGGAGGGTTCGGGCTGGCTTATTTGTTCCCTTCGA GCGGGTTCGTGCAGAAGCTGTTTTCGATGGAGAGTTGGCTCGACAAGATCCACGAAGGTGTTGACCGGTTGGCCGAGAGCATCATCAGCCAGCATAGGGA GAGGAGGAAGTTGGTGAAGGTGAAGGAGGATGATGAAGATTTGCTTGATGTTCTTCTGAATCTTCAAGAAGATGAGACTACTCTTGGTTTTAACTTGTCT AACAACTGCATCAAGGCGTTCATGCTGGACTTATTCCTAGCCGGAAGCGAGACACCATCAGCGCTAATCGAATGGACAATGTCAGAGATGGTGAAGCACC CACGAGTCCTCGAAAAGGCACAATCCGAAGTGAGAAAGCACTTCGCCGAAAAAGGTCGAGTCGAAGAGTCCCAAATCCACCAACTCGACTACTTGAAACA CGTCATCAAAGAGGCCCTCAGGCTACACACCCCGGCGCCTCTGGTGCTCCCCCGAGAGTGCAGGGAGGAGTGCAAAGTTGACGGCTACGACATCCCATTG AAGACCACGGTCGTGGTCAACGTCTGGGCCATCGCCAGGGATCCTCGCTACTGGGGCAAAGATGCCGAAGAGTTCAGGCCCGAGAGGTTCGCGGATAGCA GCCTGAGTTACAAAGGCGGGGACTTTGAGTTCCTGCCGTTCGGTGCTGGAAGAAGGATGTGTCCTGGGATGGGGTTCGGGCTAGCTTCTGTCGAGCTCAG TCTAGCGAATCTGCTGTTCCATTTCGACTGGAAGCTTCCGCTCGGAGTCGAGCCCGAGAATTTGAATATGGATGAGGTGTTTGGGATTACTATCAGGAGG AAGAAGCACTTGGAACTTGTTCCTTCAGTCTACAATCCTGTTCCTTAA
AA sequence Show only first row Show all	>Lus10017676 pacid=23155576 polypeptide=Lus10017676 locus=Lus10017676.g ID=Lus10017676.BGIv1.0 annot-version=v1.0 MDHLLQIPLLLVITFATISFISFVTKNLSKSYTSKNVDDKNIKYLPPSPWKLPMIGHIHHFMTAQPPHRRLRELSQKHGDVVSLDLGEMPHVVISSAEAA KQVMRTHDINFAQRPFHPHQAKVMYGGINLIHAPYGDYWRQLRRIATLELLTARRVESLRRVREAEVQSLIKDISNHAGSTIDLSMKLFNMTYSIISRAT FGDVSGEQEEFIQIAEEMVKYGGGFGLAYLFPSSGFVQKLFSMESWLDKIHEGVDRLAESIISQHRERRKLVKVKEDDEDLLDVLLNLQEDETTLGFNLS NNCIKAFMLDLFLAGSETPSALIEWTMSEMVKHPRVLEKAQSEVRKHFAEKGRVEESQIHQLDYLKHVIKEALRLHTPAPLVLPRECREECKVDGYDIPL KTTVVVNVWAIARDPRYWGKDAEEFRPERFADSSLSYKGGDFEFLPFGAGRRMCPGMGFGLASVELSLANLLFHFDWKLPLGVEPENLNMDEVFGITIRR KKHLELVPSVYNPVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017676 [exp]	0	1
AT2G13980			Polynucleotidyl transferase, r...		Lus10011601 [exp]	6.2	0.7232
AT4G01575			serine protease inhibitor, Kaz...		Lus10009865 [exp]	6.5	0.6503
AT5G39160			RmlC-like cupins superfamily p...		Lus10042517 [exp]	12.1	0.8229
AT5G06740			Concanavalin A-like lectin pro...		Lus10029291 [exp]	20.0	0.6404
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	22.1	0.6740
					Lus10029831 [exp]	22.4	0.7178
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10018143 [exp]	31.7	0.7094
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10024706 [exp]	68.1	0.6428
					Lus10029832 [exp]	68.4	0.6382
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	68.9	0.6382

Compare expression of checked genes

Lus10017676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.