Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 315 / 1e-101 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G25180 314 / 2e-101 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT3G26330 310 / 6e-100 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26310 308 / 4e-99 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26270 307 / 7e-99 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT3G26210 306 / 2e-98 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT4G31500 306 / 3e-98 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT5G25140 305 / 6e-98 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25130 303 / 5e-97 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT3G26320 302 / 7e-97 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017676 [exp] 846 / 0 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10033634 [exp] 843 / 0 AT5G25180 363 / 1e-120 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10033633 [exp] 839 / 0 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10024331 [exp] 681 / 0 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10029035 [exp] 449 / 2e-153 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 423 / 2e-143 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034230 [exp] 423 / 2e-143 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10002885 [exp] 410 / 3e-138 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10009903 [exp] 406 / 4e-137 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074900 [exp] 421 / 4e-143 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 417 / 3e-141 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 416 / 4e-141 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 416 / 8e-141 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 412 / 2e-139 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 410 / 1e-138 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 406 / 3e-137 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.011G130850 [exp] 401 / 3e-135 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 400 / 6e-135 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G028000 [exp] 385 / 5e-129 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017677 pacid=23155499 polypeptide=Lus10017677 locus=Lus10017677.g ID=Lus10017677.BGIv1.0 annot-version=v1.0 ATGGATCACCTTCTTCAGATCCCACTCTTGCTGGTAATCACCTTCGCAACCATCTCCTTCATCTCGTTCGTCACCAAGAAGTCATTGCGACCCTACGGAT CAATCTCGAAGAACATTGATGATAAGAGCGTCAAGTACTTTCCTCCAGCTCCATGGAAGCTTCCGGTAATCGGACACATCCACCACTTCCTGGTCACGGC CCAACCACCCCACCGCCGCCTCCTTGAGCTTTCCCAGAAGCACGGGGATGTCCTCCGGCTGGACCTCGGGGAGATGCCCCACGTCGTCATTTCATCGGCG GAGGCTGCGAAGCAGGTGATGCGGACTCATGACATCTGCTTCGCTCAACGACCGCTCCACCCTGACAAGGCCGAGGTCATGTATGGAGGGATTGGCCTAA TCAACGGACCCTATGGAGACTACTGGCGCCAGCTCCGCCGCATTGCCACGCTTGAACTGCTCACCGTCCGACGTGTGGAGTCCATGCGGCGAGTTAGGGA GGCCGAGGTGCTCACTCTACTGAAAGACATTTCCAACCATGCTGGTTCCACCATCGACCTCTCCAAAAAGCTGTTCGACATGACCTATTGCATCATATCC AGGACAACCTACGGCGACATCTCAAATGAGCAGGAAGAGTTCATAAAGATCGCCGAAGAGATAGTGGAGTACAGTGGGGGGTTCAATCTGGCTTACTTGT TCCCTTCGAGCGGGTTAGTCCGGAGGCTGTTCTCGATGAAGAGTTGGCTTGACAAGGCCCATGAAGGTGTTGACCGGTTGGCTGAGAGCATCATCAGTCA GCATAGGGAGAGGAGGAAGTTGGTGAAGATGAAGGAGGAGGATGAGGATTTGCTTGATGTTCTTCTCAATCTTCAGGAAGATGAGACTACTCTTGGTTTC AGCTTGTCTAACAACTGCATCAAGATTTTCATGCTGGAAATATTCCTAGCCGGAAGCGAAACACCATCGGCGCTAATAGAATGGACGATGTCGGAGATGG TGAAGCACCCACGAGTCCTCCAAAAGGCACAATCCGAAGTGAGAAAACTCTTCGCCGAAAGAGGTCGAGTCGACGAGTCCCAAATCCACCAACTCGACTA CTTAAAACTCGTCATCAAAGAGTCCCTCAGGCTACACACTCCAGCACCTCTAGTGCTCCCCCGAGAGTGCATAGAGGAGTGTCAAGTTGGCGGCTACGAC ATCCCCTTGAAGACCACGGTCTTGGTCAACGTCTGGGCCATCGCCAGGGATCCTCGTTACTGGGGCAAAGATGCTGAAGAGTTCAAGCCCGAGAGGTTCG TGGATAGCCGTGTGAGTTACAAAGGTGGGGACTTTGAGTTCCTGCCGTTCGGTGCTGGGAGGAGGATGTGTCCTGGGATGGGGTTCGGGCTAGCGACTGT CGAGCTCTGTCTGGCGAATTTGCTGTTCCATTTCGTCTGGAAGCTTCCGCCGGGAATCGAGCCGGAAGGGTTGAATATGGATGAGATGTTTGGAGTAACG ATCAGGAGGAAGAAACACTTGGAGCTCGTGCCTCTAGTGTGCAATCCTGTTCCTTGA
AA sequence Show only first row Show all	>Lus10017677 pacid=23155499 polypeptide=Lus10017677 locus=Lus10017677.g ID=Lus10017677.BGIv1.0 annot-version=v1.0 MDHLLQIPLLLVITFATISFISFVTKKSLRPYGSISKNIDDKSVKYFPPAPWKLPVIGHIHHFLVTAQPPHRRLLELSQKHGDVLRLDLGEMPHVVISSA EAAKQVMRTHDICFAQRPLHPDKAEVMYGGIGLINGPYGDYWRQLRRIATLELLTVRRVESMRRVREAEVLTLLKDISNHAGSTIDLSKKLFDMTYCIIS RTTYGDISNEQEEFIKIAEEIVEYSGGFNLAYLFPSSGLVRRLFSMKSWLDKAHEGVDRLAESIISQHRERRKLVKMKEEDEDLLDVLLNLQEDETTLGF SLSNNCIKIFMLEIFLAGSETPSALIEWTMSEMVKHPRVLQKAQSEVRKLFAERGRVDESQIHQLDYLKLVIKESLRLHTPAPLVLPRECIEECQVGGYD IPLKTTVLVNVWAIARDPRYWGKDAEEFKPERFVDSRVSYKGGDFEFLPFGAGRRMCPGMGFGLATVELCLANLLFHFVWKLPPGIEPEGLNMDEMFGVT IRRKKHLELVPLVCNPVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017677 [exp]	0	1
					Lus10039965 [exp]	7.0	0.9127
AT5G51105			Protein of unknown function (D...		Lus10043285 [exp]	10.9	0.8820
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041829 [exp]	12.8	0.8503
AT1G21130		IGMT4	indole glucosinolate O-methylt...		Lus10030187 [exp]	13.7	0.8756
AT1G27170			transmembrane receptors;ATP bi...		Lus10008414 [exp]	15.0	0.7914
					Lus10036026 [exp]	16.1	0.7717
AT3G53010			Domain of unknown function (DU...		Lus10042635 [exp]	16.4	0.7947
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10030174 [exp]	16.4	0.7580
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	17.0	0.8463
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	19.6	0.7725

Compare expression of checked genes

Lus10017677 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.