Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26210 124 / 2e-34 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G48270 124 / 4e-34 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G26230 122 / 1e-33 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G26830 121 / 4e-33 CYP71B15, PAD3 PHYTOALEXIN DEFICIENT 3, Cytochrome P450 superfamily protein (.1) AT3G26270 119 / 2e-32 CYP71B25 "cytochrome P450, family 71, subfamily B, polypeptide 25", cytochrome P450, family 71, subfamily B, polypeptide 25 (.1) AT4G13310 118 / 5e-32 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G26300 117 / 8e-32 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26330 117 / 9e-32 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26280 117 / 1e-31 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT5G25130 117 / 1e-31 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017677 [exp] 209 / 2e-66 AT3G26300 353 / 2e-116 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10033634 [exp] 209 / 3e-66 AT5G25180 363 / 1e-120 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10033633 [exp] 208 / 6e-66 AT3G26330 362 / 4e-120 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10017676 [exp] 207 / 2e-65 AT3G26300 367 / 3e-122 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10024331 [exp] 200 / 1e-62 AT5G25180 378 / 4e-126 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) Lus10016601 [exp] 158 / 1e-46 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10029035 [exp] 153 / 8e-45 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10004907 [exp] 151 / 1e-44 AT3G26330 330 / 2e-108 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10010545 [exp] 150 / 5e-44 AT3G26330 321 / 8e-105 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G184000 [exp] 140 / 4e-40 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184900 [exp] 139 / 7e-40 AT3G26320 529 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.008G184400 [exp] 139 / 1e-39 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.007G074900 [exp] 134 / 6e-38 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G131001 [exp] 129 / 1e-37 AT3G26230 230 / 4e-72 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.007G075000 [exp] 132 / 3e-37 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 132 / 5e-37 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 130 / 2e-36 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 129 / 2e-36 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 129 / 3e-36 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017678 pacid=23155431 polypeptide=Lus10017678 locus=Lus10017678.g ID=Lus10017678.BGIv1.0 annot-version=v1.0 ATGTCCGAGATGGCGAGGCACCCAAGAGTCCTCCAAAAGGCACAATCCGAAGTAAGAAAACTCTTCGCCGACAAAGGTCGAGTCGACGAGTCCCAAATCC ACCGACTCGACTACTTGAAACTCGTCATCGAAGAGGCCCTCAGGCTACACACCCCGGCGCCTCTACTACTCCCTCGTGAGTGCAGAGAGGAGTGTAGAGT TGGTGGCTACAACATCCCCTTGAGGACCACAGTCGTGGACAACGTCTGGGCCATCGTCTGGGATCCTCGTTACTGGGGTGAAGATGCTGAAGAGTTCAGG CCCGAGAGGTTTGTGGATAGCAGCATGACTTACAAAGGTGGGCACTTTGAGTTCCCTAAACTCCTGAAAGGGTCGCTAATAGGATACAAAGAACTACAAT ACGTTTAG
AA sequence Show only first row Show all	>Lus10017678 pacid=23155431 polypeptide=Lus10017678 locus=Lus10017678.g ID=Lus10017678.BGIv1.0 annot-version=v1.0 MSEMARHPRVLQKAQSEVRKLFADKGRVDESQIHRLDYLKLVIEEALRLHTPAPLLLPRECREECRVGGYNIPLRTTVVDNVWAIVWDPRYWGEDAEEFR PERFVDSSMTYKGGHFEFPKLLKGSLIGYKELQYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10017678 [exp]	0	1
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	5.3	0.6777
					Lus10000377 [exp]	8.5	0.6647
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	17.5	0.5951
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	23.7	0.5759
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	28.0	0.5548
AT5G17430	AP2_ERF	BBM	BABY BOOM, Integrase-type DNA-...		Lus10011303 [exp]	28.4	0.5637
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	28.9	0.5548
					Lus10039418 [exp]	29.5	0.6259
					Lus10014737 [exp]	29.7	0.5548
					Lus10039552 [exp]	30.5	0.5548

Compare expression of checked genes

Lus10017678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.