Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19220 520 / 4e-176 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 504 / 2e-169 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 344 / 5e-110 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 331 / 1e-106 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 330 / 5e-105 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 243 / 7e-73 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 226 / 6e-68 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 225 / 2e-66 ARF ARF4 auxin response factor 4 (.1) AT4G23980 214 / 3e-63 ARF ARF9 auxin response factor 9 (.1.2) AT2G33860 201 / 8e-59 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033635 [exp] 608 / 0 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10027600 [exp] 428 / 4e-141 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10022943 [exp] 367 / 3e-118 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10024320 [exp] 350 / 6e-115 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10012421 [exp] 349 / 4e-112 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10033597 [exp] 345 / 4e-111 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 348 / 8e-111 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10033598 [exp] 342 / 2e-110 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 340 / 1e-109 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138500 [exp] 540 / 0 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 521 / 1e-176 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 430 / 3e-141 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 429 / 6e-141 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.004G078200 [exp] 343 / 6e-111 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.005G207700 [exp] 345 / 8e-111 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 341 / 4e-110 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 343 / 1e-109 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.001G358500 [exp] 341 / 3e-109 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.011G091900 [exp] 338 / 5e-108 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10017680 pacid=23155469 polypeptide=Lus10017680 locus=Lus10017680.g ID=Lus10017680.BGIv1.0 annot-version=v1.0 ATGCCTCCAATGGGAAGTCTTGTTGTCTACTTCCCTCAAGGCCATAGTGAACAGGTTGCTGCATCTATGCAGAAGCAGACTGATTGCATACCAAGCTACC CCAACCTTCCTTCAAAGTTGATTTGCATGCTTCATAATTGTGACAGGGAAGCATTGATAGCTTCTGATATGGGAATGAAGCAGAATAGGCAACCTGCTGA GTTCTTCTGCAAAACTCTTACAGCTAGTGATACAAGCACTCATGGTGGATTTTCTGTCCCTCGAAGAGCTGCAGAAGAGCCGCGGAAAAGATTTTCCCAC CTCTTGATTTCACAATGCAACCACCAGCACAGGAACTCGTTGCTAGAGATCTACACGACAATGCGTGGACCTTCAGGCATATCTATCGCGAATATTCACA AATTCTTCGTGATAGGCCAACCAAAAAGGCATTTGCTTACTACAGGATGGAGTGTGTTTGTTAGCAATAAGAGACTCTTTGCTGGTGATTCAGTTCTATT TATTAGAGATGAGAAACAGCAGTTGCTTTTGGGCATCAGACATGCCAATAGGCAGCAGCCAGCTCTCTCTTCATCAGTCATATCGAGTGACAGCATGCAT ATCGGGATTCTTGCAGCCGCGGCTCATGCTGCTGCAAACAATAGCCCATTCACCGTGTTCTATAATCCTAGGGCGAGCCCTTCGGAGTTTGTGATTCCTT TCTCCAAGTATAACAAGGCGATGTATACACAAGTATCTTCTGGAATGAGATTCAGGATGATGTTCGAGACCGAGGAGTCAGGTGTCCGCAGATATATGGG TACAGTCACAGGTGTTACTGACTTAGATCCTGTGCGGTGGAAGAGTTCACAGTGGCGCAATCTTCAGGTTCGTTGGGATGAATCAACGGCTGGTGAACGA CCAAGCCGAGTCTCGATTTGGGACATTGAGCCTGTTGTCACTCCATTCTACATATGCCCACCTCCCTTCTTCAGACCCAGGTTCCCTAAACAGCCTGGAA TGCCTGATGACGAGTCGGATATTGAAAATGCTTTCAAAAGGGCAATGCCTTGGCTTGCGGATGACTTTGGTATGAAGGAAGGAGGGCAAAGCTCAATCTT TCCTGGCCTAAGTTTGGTTCAGTGGATGATTGGCATCAACTCAAACAGGATTGTTCCCCTCCATGCTTCCTTCAAATACTCTGCATAG
AA sequence Show only first row Show all	>Lus10017680 pacid=23155469 polypeptide=Lus10017680 locus=Lus10017680.g ID=Lus10017680.BGIv1.0 annot-version=v1.0 MPPMGSLVVYFPQGHSEQVAASMQKQTDCIPSYPNLPSKLICMLHNCDREALIASDMGMKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEEPRKRFSH LLISQCNHQHRNSLLEIYTTMRGPSGISIANIHKFFVIGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIRDEKQQLLLGIRHANRQQPALSSSVISSDSMH IGILAAAAHAAANNSPFTVFYNPRASPSEFVIPFSKYNKAMYTQVSSGMRFRMMFETEESGVRRYMGTVTGVTDLDPVRWKSSQWRNLQVRWDESTAGER PSRVSIWDIEPVVTPFYICPPPFFRPRFPKQPGMPDDESDIENAFKRAMPWLADDFGMKEGGQSSIFPGLSLVQWMIGINSNRIVPLHASFKYSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	0	1
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	4.5	0.9352
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	5.2	0.9273
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	6.0	0.9278
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	7.0	0.9228
AT5G07740			actin binding (.1)		Lus10003482 [exp]	9.4	0.9029
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	9.7	0.9246
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	11.0	0.9243
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10006110 [exp]	12.7	0.9013
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	14.7	0.9272
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	15.1	0.9178

Compare expression of checked genes

Lus10017680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.