Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20730 414 / 1e-132 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G19220 409 / 2e-131 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT1G19850 156 / 2e-40 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G30330 135 / 2e-33 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 125 / 4e-30 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT5G62000 97 / 8e-21 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT5G60450 94 / 6e-20 ARF ARF4 auxin response factor 4 (.1) AT1G59750 93 / 1e-19 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 89 / 2e-18 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 86 / 1e-17 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033635 [exp] 626 / 0 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10022943 [exp] 228 / 1e-64 AT1G19220 546 / 4e-177 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10027600 [exp] 217 / 6e-61 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017640 [exp] 143 / 6e-36 AT5G37020 762 / 0.0 auxin response factor 8 (.1.2) Lus10024320 [exp] 141 / 2e-35 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10012421 [exp] 141 / 4e-35 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10033597 [exp] 140 / 5e-35 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 137 / 6e-34 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10020805 [exp] 112 / 7e-29 AT5G37020 181 / 5e-54 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138500 [exp] 484 / 3e-159 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 466 / 6e-153 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 237 / 7e-68 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 204 / 2e-56 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.002G024700 [exp] 155 / 5e-40 AT1G19850 1032 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.005G236700 [exp] 155 / 5e-40 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.001G358500 [exp] 141 / 3e-35 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.002G055000 [exp] 135 / 3e-33 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.011G091900 [exp] 134 / 5e-33 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.005G207700 [exp] 133 / 1e-32 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10017681 pacid=23155548 polypeptide=Lus10017681 locus=Lus10017681.g ID=Lus10017681.BGIv1.0 annot-version=v1.0 ATGTTCCAGGCATCTGTCTCAAGTAGCAGTGTGGTTGGCCATTGTCAGATTCCAAATCAAAGTTTGCAGCAGGCAGTTGGCTACTCTCAACTTCAACAGC AGAACATGCTAGGAAGCAACGTGCAAGCTCAAGCTATCCCTTCTCCTAACAAGACTCCATACCAGCTAACATCACTACAGCAAGATTCCAAGTTACAGCA ACAAGTGGAGCAGCAAAGGCATCTACAGCAGACACAACTTCAGCAATCCTCTCTTCCATTGTCACCCCACAACGTACCACATAGATCCCAACTGCAGCCT CAGACACAGCCTCAGACACAGCCTCAGATACAGCATATTTTACAGGCGAGCCTCCCGGACCAACAGTTTCAGTTGCTTCAGAAGTTGCAGCAGCAGCAGT TGCTCTCTCCCACGAGCTTACTTTTGCAGCAACAACAAACACATCACCAGAACCAACAGTACCAGCAGCCACCATTCAGCAGTGGAAGCTTCTCGACATC TGGACTCGTGCAAACACAGTCATTTCCTGTGAACCAGTATCAAGGCCTGCAGAAGCTGCCTACACCAGTTCCAGCCGGTTCGCATGGAGAGACTCCATCA TGTTCCACATCAGCTTCGCTGAATAACTCTAATGTTCCACACTCTAACTTCCTCAACAAAAGCCAAGATGTCACTGCTCAACTCTTGATGGCAGATTCAG GAGGGGTAGACCCTTCAAACAATATCCTCCAAGATGTTCCTAGTAGATCGGATGCTCGGATTAAACATGAATTTTGTGGCTCAAAAGGTTCTGACCAACA GCTGAAATCGAAAGCTACAGTGGCTGATCAATTAGAGGCCTCGTCTTCTGGAACATCATACTGCTTAGAACCAGGCTCTACCCCCTTGCAAAATTTTGCA CTGCCGTCCTTTGGTCTGGATGGCGACGTGCAATCACATCAAAGAATGAATAACCTTCCTTTCTCGGCTAATATCGAAGGATTGGCACCGGACAGTTTGT TGTCAAGGGGATATGATTCCCAAAAGGATCTTCAGAACTTGCTCTCTAACTATGGAGCTAATCCTCCTAGGGACATCGAGACTGAGTTGTCTAGTGCTGG CATGAGCTCGCAGTCATTTGGGGTTCCCAATATATCTTTTAAGCCGTCATGCTCGACAGATGTTGCTATTAATGACGCTGGGGTTTTGAATAATGGGTTG TGGGCAAGTCAGACTCAACGTATGCGAACATACACCAAGGTTCAAAAGCGTGGCTCGGTGGGAAGATCAATTGACGTAACTCGTTATAAAGACTACGATG AACTCCGACATGATCTAGCCCGGATGTTTGGTATTGAAGGGCAGCTGGAAGATCCACAAAGTTCTGACTGGAAACTAGTTTACGTAGACCACGAAAACGA CATATTACTCGTTGGTGATGATCCTTGGGAGGAGTTTGTGAGTTGTGTACAAAGCATAAAGATACTCTCGTCGGTTGAAGTGCAGCAGATGAGCTTGGAT GGGGACTTGGGTAATATTGCCCCGCCTGTTGCCGATCAGGCCTGCAGTGGAAGTGATAGCGGTAACGCATGGAGAGGACACTACGAAGATAATTCGGCTG CCTCATTTAATAGATGA
AA sequence Show only first row Show all	>Lus10017681 pacid=23155548 polypeptide=Lus10017681 locus=Lus10017681.g ID=Lus10017681.BGIv1.0 annot-version=v1.0 MFQASVSSSSVVGHCQIPNQSLQQAVGYSQLQQQNMLGSNVQAQAIPSPNKTPYQLTSLQQDSKLQQQVEQQRHLQQTQLQQSSLPLSPHNVPHRSQLQP QTQPQTQPQIQHILQASLPDQQFQLLQKLQQQQLLSPTSLLLQQQQTHHQNQQYQQPPFSSGSFSTSGLVQTQSFPVNQYQGLQKLPTPVPAGSHGETPS CSTSASLNNSNVPHSNFLNKSQDVTAQLLMADSGGVDPSNNILQDVPSRSDARIKHEFCGSKGSDQQLKSKATVADQLEASSSGTSYCLEPGSTPLQNFA LPSFGLDGDVQSHQRMNNLPFSANIEGLAPDSLLSRGYDSQKDLQNLLSNYGANPPRDIETELSSAGMSSQSFGVPNISFKPSCSTDVAINDAGVLNNGL WASQTQRMRTYTKVQKRGSVGRSIDVTRYKDYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSVEVQQMSLD GDLGNIAPPVADQACSGSDSGNAWRGHYEDNSAASFNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10017681 [exp]	0	1
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10041757 [exp]	8.7	0.7740
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	10.3	0.8594
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10012404 [exp]	12.6	0.7897
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10029240 [exp]	17.7	0.8130
AT5G50175			unknown protein		Lus10043318 [exp]	18.7	0.8118
AT3G55550			Concanavalin A-like lectin pro...		Lus10024365 [exp]	19.0	0.8028
AT2G47960			unknown protein		Lus10018483 [exp]	19.8	0.8093
AT1G78310			VQ motif-containing protein (....		Lus10010347 [exp]	25.7	0.8053
AT5G66440			unknown protein		Lus10041775 [exp]	27.0	0.8321
AT5G50175			unknown protein		Lus10019469 [exp]	27.8	0.7887

Compare expression of checked genes

Lus10017681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.