Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44200 322 / 7e-112 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) AT1G66260 56 / 8e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G10400 55 / 8e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT5G06210 51 / 5e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G37720 52 / 1e-07 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT2G18510 52 / 1e-07 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 49 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 51 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 49 / 2e-07 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G59950 50 / 4e-07 RNA-binding (RRM/RBD/RNP motifs) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039887 [exp] 328 / 8e-114 AT5G44200 332 / 1e-115 CAP-binding protein 20 (.1.2) Lus10033636 [exp] 308 / 4e-106 AT5G44200 298 / 1e-102 CAP-binding protein 20 (.1.2) Lus10019838 [exp] 57 / 2e-09 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10027886 [exp] 55 / 2e-08 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 55 / 2e-08 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10041728 [exp] 53 / 9e-08 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025329 [exp] 52 / 1e-07 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10024413 [exp] 52 / 1e-07 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10024024 [exp] 51 / 2e-07 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014600 [exp] 338 / 4e-118 AT5G44200 331 / 2e-115 CAP-binding protein 20 (.1.2) Potri.007G137400 [exp] 336 / 3e-117 AT5G44200 327 / 9e-114 CAP-binding protein 20 (.1.2) Potri.009G160300 [exp] 56 / 5e-10 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G087000 [exp] 55 / 1e-08 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.012G038200 [exp] 51 / 9e-08 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 52 / 1e-07 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G124200 [exp] 52 / 2e-07 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 51 / 3e-07 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.005G125300 [exp] 51 / 3e-07 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G143100 [exp] 50 / 5e-07 AT1G16610 169 / 3e-48 arginine/serine-rich 45 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017682 pacid=23155477 polypeptide=Lus10017682 locus=Lus10017682.g ID=Lus10017682.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTGTTCAAGGATCCGACGAAGCTGTCAGCGTATCGGGACAGGAGATTTTCCGGAACGCAAGAAGAATTCGAGTATGCCCTTCAGACGTCGA CGACCGTCTACATTGGCAACATGTCATTCTACACGACGGAAGAGCAAGTCTATGAGTTGTTCACTCGAGCTGGGGAAATCAAGAAGATTATCATGGGGTT GGATAAGAACACCAAAACTCCCTGTGGGTTTTGTTTCGTCTTATACTATTCCAGAGATGATACCGAGAATGCTGTGAAGTACATAAGTGGTACAATTCTT GACGACCGGCCCATTAGAGTCGACTTTGATTGGGGATTTCAAGAAGGAAGGCAGTGGGGTAGAGGTCGAAGTGGTGGGCAGGTCCGAGATGAATATCGAA CAGATTACGATCCTGATATCCTTTCGATAGTAGCTATCAAATTTTCACGCAGGGGTGGCTATGGGAAGTTAGTTCAACAAGAACTGGAAGCTCAGAGACA GCTTGTGGATTATGGGGCTGGATCTCTCGCCTCTTTCCCTCCGGTTATGCCACCACCTCAGTATGGTAGACATGGAGGTCCTGGTCATGGCGGTCAGCAT CGGCAGGGTAGAGATTTCCATCGAAAGCGATATAGAGACGATGACCAATACGTACGTGAGCCTTCAAAGAGGACCTCGGACCATGAATCTCAAAGAAACC CTGATCATGAATCACGGCCGGAGAAGAATCCTCGTTTCCGGGAAAGCGGGGACTCTGATGAGGACGAGGACAACGAGAAGAAGCAAAAACCATAG
AA sequence Show only first row Show all	>Lus10017682 pacid=23155477 polypeptide=Lus10017682 locus=Lus10017682.g ID=Lus10017682.BGIv1.0 annot-version=v1.0 MASLFKDPTKLSAYRDRRFSGTQEEFEYALQTSTTVYIGNMSFYTTEEQVYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSRDDTENAVKYISGTIL DDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPDILSIVAIKFSRRGGYGKLVQQELEAQRQLVDYGAGSLASFPPVMPPPQYGRHGGPGHGGQH RQGRDFHRKRYRDDDQYVREPSKRTSDHESQRNPDHESRPEKNPRFRESGDSDEDEDNEKKQKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	0	1
AT1G20770			unknown protein		Lus10013217 [exp]	1.4	0.9359
AT4G22000			unknown protein		Lus10008487 [exp]	2.0	0.9345
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10033636 [exp]	3.0	0.9090
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	3.0	0.9300
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	4.0	0.9188
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	4.2	0.9157
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	6.2	0.8762
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	6.3	0.9173
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	7.9	0.9103
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035742 [exp]	8.4	0.8979

Compare expression of checked genes

Lus10017682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.