Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19410 653 / 0 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT5G52860 442 / 2e-148 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 433 / 3e-145 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT1G53270 409 / 1e-135 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT2G13610 410 / 2e-135 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT3G55090 328 / 1e-102 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 301 / 1e-92 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55100 290 / 8e-89 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G13580 285 / 3e-86 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT3G55130 284 / 3e-86 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033637 [exp] 1091 / 0 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 823 / 0 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 801 / 0 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 442 / 5e-148 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 392 / 3e-128 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 384 / 5e-125 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 300 / 1e-91 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10039304 [exp] 284 / 6e-90 AT5G52860 504 / 8e-177 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 268 / 9e-80 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070100 [exp] 726 / 0 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 444 / 6e-149 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 436 / 5e-145 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 432 / 6e-144 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 431 / 1e-143 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 427 / 3e-142 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 422 / 1e-140 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 304 / 3e-93 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 303 / 5e-93 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 300 / 6e-92 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10017683 pacid=23155564 polypeptide=Lus10017683 locus=Lus10017683.g ID=Lus10017683.BGIv1.0 annot-version=v1.0 ATGTCATCGTCCTGCTTCAACACTCCGGCCCGGCAGACAGTCGTGGCCGCCGACGACCAAGACTCCACCTTTCCTTCCTCCATTTCCTCCTCTTCTTTCC ATCTGACTGTCACAAACCTTTCCTTTACCCTCACTCCCAAGGCATCACCCTCCTGCCACCACCTTCCGTGGCGGCCCAAACCCCAGCCGATCGATATCCT GAAATCCATTTCGTTCCAGGCCGGAAATTCGAAAATCCTCGCGATCATCGGTCCAAGTGGTTCCGGAAAGTCCACCCTCCTCCGGTACATATCCGGTAGG GTGACGGACTCTGAGTTCGATCCCAGGGCTGTTGCAATCAACGGCCGTGGGATCTCTAAGCCTTCTCGGTTGAGAAAGATTTGTGGGTTTGTACCCCAAG AAGATAACTTGCTTCCTCTGCTTACTGTCAGGGAAACCCTAATGTACAGCGCGAAGTTCAGATTAAAAGAGCTGACCTTGAAGGAGAAAGAAGAGAAAGT TGATGGCTTGTTGGTTGAGCTGGGGCTTGTGCGAGTGGCCGGCAGCTTTGTCGGTGACGAATCCTGCAGAGGAATCTCAGGCGGAGAGAGGAAGCGAGTT TCGATTGGGGTTGACTTGATCTCCGACCCTCCGATTCTTATTCTCGACGAACCCACTTCAGGTCTCGACAGTAGCTCCGCGCTTCAGGTTATCGAACAGC TTTCTTCCATTGCTCGGGTTAAGCAGAGGACGATCGTGATCTCGATTCACCAGCCAAGTTACCGGATCATACAAATCATCCCCGGTTTTCTCATCCTGTC CCGGGGCTTCGTCGTGCATTACGGTAGCTTGGAATCGTTGCAGAACTCCATCGCTGATCTAGGGTTCCGGATTCCTGACAGGTTAAACCCTATCGAATTC GCCATGGAAATCATACACTCGCTCGAAGATTCCATGAAATCGCAAATCCTAAATCCGCCCGAATCAGATACAACGACAACAACAATCAACCGCTATCACC AATCAGACAACCTGCATTCCCCTGAATCAATAATCGATTTCTCCGAAATTGCAAACCTCTGCTCGAGATCGTGGAAGATCATCTACAGAACCAAGCAACT CTTGACCGTAAGGACGATGCAAGCCCTAGCCGGAGGGTTCGTACTAGGGAGCGTGTATATCAAAATACGGAAACACGGCCACGACGACGACAACGGAGGA GCAATCGCAGAGCGATTCGGGCTATTCGCATTCAGCCTCAGCTTCTTGCTCTCCTCCACCGTCGAAGCCCTCCCGATCTACCTCCAAGAACGGCGAGTCC TGATGAAGGAAGCTTCCCGAGGAAGCTACCGAATCTCGAGCTACGTTATTGCCAACACCGTCATCTTCCTCCCATTCCTCCTCGTAGTCGCAGTTCTCTT CTCCGTCCCGGTCTACTGGCTCGCAGGGCTCAACCCTTCAATCGCCACGTTCGGGTTCTTCACGCTCATCGTGTGGCTGATCATCCTGACGGCGAGCTCA CTGGTCATGTTTCTCAGCGCGGTCTCGCCAGATTTCATCGTGGGGAATTCGATCATCTGCGGCGTGCTGGGAGCCTTCTTCCTCTTCTCCGGATACTTCA TCCCCAAGGACAGTATTCCCAAGTACTGGATTTTCATGTACTACGTGTCGCTGTACCGGTACCCGCTCGATTCTCTGCTGACGAACGAGTACTGGAGTTC GAGAGAGGATTGTTTCCGGTGGTCGTCGTCTGACAATGGGTGTTCGATGACGGGGAATGATGTGCTGAGGAGTAGAGGGCTGGAGAGGGATCGTCGGTGG GAGAATGTCGGGATTATGGTCGGGTTTTTCGTGCTGTACCGGGTTCTTTGTTGGGTCATGCTGGTTCGGAAGGCTTCAAGAACCACTATTTAG
AA sequence Show only first row Show all	>Lus10017683 pacid=23155564 polypeptide=Lus10017683 locus=Lus10017683.g ID=Lus10017683.BGIv1.0 annot-version=v1.0 MSSSCFNTPARQTVVAADDQDSTFPSSISSSSFHLTVTNLSFTLTPKASPSCHHLPWRPKPQPIDILKSISFQAGNSKILAIIGPSGSGKSTLLRYISGR VTDSEFDPRAVAINGRGISKPSRLRKICGFVPQEDNLLPLLTVRETLMYSAKFRLKELTLKEKEEKVDGLLVELGLVRVAGSFVGDESCRGISGGERKRV SIGVDLISDPPILILDEPTSGLDSSSALQVIEQLSSIARVKQRTIVISIHQPSYRIIQIIPGFLILSRGFVVHYGSLESLQNSIADLGFRIPDRLNPIEF AMEIIHSLEDSMKSQILNPPESDTTTTTINRYHQSDNLHSPESIIDFSEIANLCSRSWKIIYRTKQLLTVRTMQALAGGFVLGSVYIKIRKHGHDDDNGG AIAERFGLFAFSLSFLLSSTVEALPIYLQERRVLMKEASRGSYRISSYVIANTVIFLPFLLVVAVLFSVPVYWLAGLNPSIATFGFFTLIVWLIILTASS LVMFLSAVSPDFIVGNSIICGVLGAFFLFSGYFIPKDSIPKYWIFMYYVSLYRYPLDSLLTNEYWSSREDCFRWSSSDNGCSMTGNDVLRSRGLERDRRW ENVGIMVGFFVLYRVLCWVMLVRKASRTTI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	0	1
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	1.0	0.9224
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	2.2	0.8747
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	5.3	0.8601
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	8.5	0.8613
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	8.9	0.8414
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	9.2	0.8413
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	13.1	0.8854
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	13.7	0.8811
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10027542 [exp]	15.2	0.8279
AT3G48340		CEP2	cysteine endopeptidase 2, Cyst...		Lus10033631 [exp]	18.4	0.8550

Compare expression of checked genes

Lus10017683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.