Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28010 596 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 317 / 8e-99 RPF2 rna processing factor 2 (.1) AT1G62930 316 / 2e-98 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 303 / 2e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 301 / 9e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 300 / 3e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 295 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 294 / 6e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 290 / 3e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 283 / 7e-86 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033640 [exp] 344 / 3e-115 AT4G28010 153 / 1e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 300 / 2e-90 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033641 [exp] 273 / 3e-88 AT4G28010 120 / 3e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 289 / 6e-87 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 290 / 8e-86 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 278 / 3e-82 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 278 / 2e-81 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 268 / 3e-80 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10010407 [exp] 273 / 7e-80 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069600 [exp] 801 / 0 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 360 / 3e-114 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 313 / 2e-96 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 315 / 2e-94 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 302 / 4e-93 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G105700 [exp] 306 / 2e-92 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G045000 [exp] 292 / 2e-89 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 292 / 2e-89 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 289 / 2e-88 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 286 / 3e-87 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017684 pacid=23155491 polypeptide=Lus10017684 locus=Lus10017684.g ID=Lus10017684.BGIv1.0 annot-version=v1.0 ATGATGAGAACACGACGAGCCTGCAATTGCTTCCCACCGAAGAGGAAGCTTTTCCCAGTTAAGTTCTTCTGTTGCCTTTCCCATGTAGAAAACCAGCTGA AATCTCTATGCGAAAAGCCGAATGCCAACTTCCCAGCAGCAGTTTCCCTATTTTACGACACTCTCGATTCTACCCTCTTGCCGCCTCCAGTCTGCAATTC TCTCCTTTTATCTTTGGTAAGGGCAAAGAGCTACGAGCTTGCTCTTTCAGTGTACGGAAGAATGGTTCTGTTTAGTATCATGCCTGATTTCAAATCATTG AGCGGTTTAATCGATTGTTTTGTTCATACGAATCGGACCGAATTTGGATTCGGTGTTCTTGGATGCATGTTGAAGCGTGGCTTCACTCATAATGTGTATA TTATGAATCTCATGTTAAAGGGTTTGTGCAGAAAGGGTGAAGTAGACAAAGCTATGAATTTGTTGAGTGACATGAAAAGGTTTAATCTTTCACCTGATTC CGTTAGTTACAACACGGTTGTGAGCGGTCTTTGCAAGTCGAATAAGTTGGAACAGGCTGCGAATCTGTTGTCCGAGATGGAAGCATCGGCGAATTCGTTC ACATATGCGACGTTGATTGATTGTCTTTGTAAAAGTGGCAAATTGGATGATGCTTTGTCATTGTTGGAGGAGATGAAGAGGAAAAGGTTAGATGTTGATG TTGTGGTATACGGTACACTGATCAATGGTTTCGTTAGTAGAGGACGGTACGATGAAGGGAAGAAAATTTTCGATGAGATGATGCAGAAAGGTGTTATGCC GAATGTGGTTGTGTATAGCTCCTTGCTGAATGGTCTCTGTAAGATGAAGCAGTGGAATGAGGTGACGAATATGCTGACGGCCATGTCCGAAAGGGGAGTT GATCCTGATGTTGTTACTTATACTTATCTGATTAAAGGGTTGTGCAAAGATGGGAAGTCTAGCAAGGCGATGGAATTGTTTCATCGGATTCAAGATAGCG ACGAAGATGTTGAAAGTGTTGTACTTTATAATGTTCTGATTGATGGACTGTGCAAAGAAGGACTTGTTTCCGATGCTTTCAAGATCATGGAAATGATGTT GGAAAAGGGGAAGAAGACGAAACCAGATATTGTTTCTTACAATTCATTACTAATGGGGCTTTGCAACAGTGGTCAGGTTGAAGAGGCACTGAAGTTCTTC TTCAATGTGTTTAAGAAGGATCGGAATCTCATTGAGCCCGATGTCTTCACTTTCAACATTCTGATACAAGGGCTCTGCAAAAAAGGTTGCCTTGACAAAG CTATGGAGATTTACGATGCGATGATCGCTCGTGGGGTCTCCGGTAATTTGATAACTTACAATGTTCTGATTGGGGAGCATCTAAAGTCTGGCTTAGTTGA CGAAGCTATGTGTCACTGGAAACATGTTCATAAGCTCGGACTTGTTCCCAATTCAATGACGTATAGTTTCATGATAGACGGATTCTGTAAGATGCGTTTG CTTAATGTTGCGAAAGGACTCTTTACCAAGATGAAAATACGTGGACTTGTCCCCACATTATCAGACTACAATTCGTTGGTGGCATCGCTATGTAAAGAAA GTAGCTTGGAGCAGGCAAGGAGGGTTTTTCAAGAGATGCGAGACTCGAACTATGTCCCTGATGTTGTCTCGTTCAATACGATGATTGATGGATCGTTGAA AGCCGGAGACGTTCAGTATGCCAAAGAGCTGCTTGATGAAATGGTGCAAATGGGTCAGACGCCGGATGTTTTTACATATGCTGTGTTGATTAATCGATTG TCGAAACTCGGACAGGTGGACGAGGCTAAGGGAATCTTTGAGAGGATGGTTTCGTTAGGTGTTAAACCGGACAGCCACGTATATGATTCGTTGTTGAAAG GAGTGCTTTCGGAAGGGGAAGCTGAAGAGATCATCGATTTGCTGCGTCGAATGGCTGACCATGGTGTCGTTCTTGACTCGAAGATAAGTGAGACAATCTT GGTGTGTTTATGTGATAGCCTTGCTGATTATGATATAGCTCGAATTTTGCCACAATTTCGTTGCGAGTCGGAAGGGAAGAACTTGTCTTGTGAGGATCTC TTGGTAAAGTTAGAAGAAGCTATTCCTCAAACTCAAGGCTGCTTGAACTTGTCTTGTTAG
AA sequence Show only first row Show all	>Lus10017684 pacid=23155491 polypeptide=Lus10017684 locus=Lus10017684.g ID=Lus10017684.BGIv1.0 annot-version=v1.0 MMRTRRACNCFPPKRKLFPVKFFCCLSHVENQLKSLCEKPNANFPAAVSLFYDTLDSTLLPPPVCNSLLLSLVRAKSYELALSVYGRMVLFSIMPDFKSL SGLIDCFVHTNRTEFGFGVLGCMLKRGFTHNVYIMNLMLKGLCRKGEVDKAMNLLSDMKRFNLSPDSVSYNTVVSGLCKSNKLEQAANLLSEMEASANSF TYATLIDCLCKSGKLDDALSLLEEMKRKRLDVDVVVYGTLINGFVSRGRYDEGKKIFDEMMQKGVMPNVVVYSSLLNGLCKMKQWNEVTNMLTAMSERGV DPDVVTYTYLIKGLCKDGKSSKAMELFHRIQDSDEDVESVVLYNVLIDGLCKEGLVSDAFKIMEMMLEKGKKTKPDIVSYNSLLMGLCNSGQVEEALKFF FNVFKKDRNLIEPDVFTFNILIQGLCKKGCLDKAMEIYDAMIARGVSGNLITYNVLIGEHLKSGLVDEAMCHWKHVHKLGLVPNSMTYSFMIDGFCKMRL LNVAKGLFTKMKIRGLVPTLSDYNSLVASLCKESSLEQARRVFQEMRDSNYVPDVVSFNTMIDGSLKAGDVQYAKELLDEMVQMGQTPDVFTYAVLINRL SKLGQVDEAKGIFERMVSLGVKPDSHVYDSLLKGVLSEGEAEEIIDLLRRMADHGVVLDSKISETILVCLCDSLADYDIARILPQFRCESEGKNLSCEDL LVKLEEAIPQTQGCLNLSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10017684 [exp]	0	1
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	2.4	0.9364
					Lus10014954 [exp]	6.3	0.9236
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10028841 [exp]	7.3	0.8950
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10038115 [exp]	9.4	0.9295
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020299 [exp]	13.2	0.8906
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010314 [exp]	13.2	0.9260
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	14.4	0.9242
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	19.0	0.9115
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10008047 [exp]	19.0	0.9225
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	20.7	0.9130

Compare expression of checked genes

Lus10017684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.